Variant report

Variant	rs10890343
Chromosome Location	chr1:46157922-46157923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:46157774-46158027	HepG2	liver:	n/a	n/a
2	POLR2A	chr1:46157703-46158099	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr1:46157854-46158633	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:46151653..46154239-chr1:46155788..46159254,3	MCF-7	breast:
2	chr1:46155335..46157938-chr1:46214354..46216393,2	K562	blood:
3	chr1:46156649..46159424-chr1:46274017..46275928,2	K562	blood:

Variant related genes	Relation type
GPBP1L1	TF binding region
ENSG00000159596	Chromatin interaction
ENSG00000197429	Chromatin interaction
ENSG00000159592	Chromatin interaction

Extended variants
information (count: 245 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:234)

rs_ID	r²[population]
rs10157795	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10430105	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10430123	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10430124	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10749856	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10789467	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10789468	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10789470	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789471	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10890333	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10890334	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10890335	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10890336	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10890337	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10890340	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890341	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10890342	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10890344	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10890345	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10890346	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10890347	0.80[EUR][1000 genomes]
rs10890348	0.80[EUR][1000 genomes]
rs11211145	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211146	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211147	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211149	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211151	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211152	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211157	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211158	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211159	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211160	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11211161	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11211162	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11211163	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211165	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211166	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211168	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11211169	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11211170	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11211171	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211173	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11211174	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211175	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211176	0.88[ASN][1000 genomes]
rs11211177	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11211178	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11211179	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11211181	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1135812	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1135850	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11488313	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12022141	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12022673	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12023439	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12024590	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12025613	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12025621	0.88[ASN][1000 genomes]
rs12027622	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12031182	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12037459	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12037803	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12041197	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12041677	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12043945	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12045096	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12045451	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12047629	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12048866	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12049027	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12062535	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12069121	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12070775	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12081175	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12091503	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12402590	0.80[EUR][1000 genomes]
rs12404197	0.84[ASN][1000 genomes]
rs1250	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12564201	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1541131	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1547924	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1547925	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1972410	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2050376	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2152078	0.84[EUR][1000 genomes]
rs2230657	0.83[ASN][1000 genomes]
rs2230658	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2230659	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2253862	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2275085	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275086	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28361459	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28370457	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28375469	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28376548	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28378621	0.90[ASN][1000 genomes]
rs28396194	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28406914	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28432365	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28438704	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28441217	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28442079	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28456069	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28474773	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28490344	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28495425	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28498557	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28501477	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28507722	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28508523	0.82[EUR][1000 genomes]
rs28513660	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28528139	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28545085	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28550303	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28564319	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28568986	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28594599	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28597977	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28607263	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28617418	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28623463	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28635845	0.85[ASN][1000 genomes]
rs28641748	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28647556	0.90[ASN][1000 genomes]
rs28683093	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28719889	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28752166	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28789495	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28812624	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28817701	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28844317	0.90[ASN][1000 genomes]
rs28862324	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28890893	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2991977	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2991978	0.84[EUR][1000 genomes]
rs2991979	0.84[EUR][1000 genomes]
rs2991981	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2991983	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2991985	0.90[ASN][1000 genomes]
rs2991986	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2991987	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2991988	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2991989	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3013594	0.89[ASN][1000 genomes]
rs3013595	0.97[ASN][1000 genomes]
rs3013596	0.97[ASN][1000 genomes]
rs3013597	0.97[ASN][1000 genomes]
rs3014210	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3014212	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3014235	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3014236	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3014237	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3014238	0.90[ASN][1000 genomes]
rs3014239	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3014240	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3014242	0.80[ASN][1000 genomes]
rs3014243	0.94[ASN][1000 genomes]
rs3014245	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3014246	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3014247	0.91[ASN][1000 genomes]
rs3014248	0.84[EUR][1000 genomes]
rs3014249	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3014251	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34895634	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3811435	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3811436	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3935296	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4274104	0.90[ASN][1000 genomes]
rs4330955	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4415615	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4423054	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4431884	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4439382	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4468203	0.96[ASN][1000 genomes]
rs4559551	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4564187	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4586014	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4607935	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4609469	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4660312	0.96[ASN][1000 genomes]
rs4660313	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4660314	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4660879	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4660880	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4660882	0.96[ASN][1000 genomes]
rs4660883	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5021934	0.96[ASN][1000 genomes]
rs56177313	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56255771	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59916372	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61062981	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61784793	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61784795	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61784796	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61784799	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61784800	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61784801	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61784803	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61784821	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61784824	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61784833	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6429574	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6429575	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6429576	0.89[ASN][1000 genomes]
rs6656279	0.97[ASN][1000 genomes]
rs6658700	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6662164	0.89[EUR][1000 genomes]
rs6665808	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66682726	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6671802	0.97[ASN][1000 genomes]
rs6678444	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6683274	0.80[EUR][1000 genomes]
rs6686944	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6690926	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694889	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6697821	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6699418	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6699444	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6703748	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6703960	0.88[ASN][1000 genomes]
rs71500087	0.82[AMR][1000 genomes]
rs72688483	0.97[ASN][1000 genomes]
rs7519900	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7520123	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7529699	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7540578	0.80[EUR][1000 genomes]
rs7541962	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7545118	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7547414	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8179296	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179402	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9429171	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9429172	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9793568	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529631	chr1:45905936-46335246	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
2	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
3	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
4	nsv871928	chr1:46024701-46609736	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
5	nsv1011587	chr1:46051672-46244492	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
6	nsv1014128	chr1:46097670-46394540	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv1010054	chr1:46144479-46320493	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
8	nsv1006861	chr1:46144479-46417621	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
9	nsv1003049	chr1:46144479-46476149	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
10	nsv870511	chr1:46148138-46245423	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
11	nsv871233	chr1:46153203-46311275	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10890343	IPP	cis	multi-tissue	Pritchard
rs10890343	GPBP1L1	cis	Muscle Skeletal	GTEx
rs10890343	IPP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:46154400-46158800	Weak transcription	Gastric	stomach
2	chr1:46154600-46158800	Weak transcription	Fetal Kidney	kidney
3	chr1:46154600-46158800	Weak transcription	Left Ventricle	heart
4	chr1:46154600-46160200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:46154600-46160600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:46154600-46163000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:46154600-46169400	Weak transcription	Ovary	ovary
8	chr1:46154600-46177200	Weak transcription	Aorta	Aorta
9	chr1:46154600-46180000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:46154600-46188600	Weak transcription	Fetal Heart	heart
11	chr1:46154600-46206600	Weak transcription	Brain Substantia Nigra	brain
12	chr1:46154800-46158200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:46154800-46158600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:46154800-46160800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:46154800-46186000	Weak transcription	Psoas Muscle	Psoas
16	chr1:46154800-46192600	Weak transcription	Pancreas	Pancrea
17	chr1:46155000-46158200	Weak transcription	Brain Anterior Caudate	brain
18	chr1:46155000-46158800	Weak transcription	Fetal Lung	lung
19	chr1:46155000-46159000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:46155000-46159000	Weak transcription	Right Ventricle	heart
21	chr1:46155000-46159000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr1:46155000-46161400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr1:46155000-46185200	Weak transcription	Colonic Mucosa	Colon
24	chr1:46155000-46187000	Weak transcription	NHLF	lung
25	chr1:46155000-46215800	Weak transcription	Small Intestine	intestine
26	chr1:46155200-46158000	Strong transcription	Fetal Stomach	stomach
27	chr1:46155200-46158200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:46155200-46158200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr1:46155200-46158600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr1:46155200-46158800	Weak transcription	HMEC	breast
31	chr1:46155200-46159000	Weak transcription	Brain Angular Gyrus	brain
32	chr1:46155200-46159000	Weak transcription	HSMMtube	muscle
33	chr1:46155200-46159400	Weak transcription	NH-A	brain
34	chr1:46155200-46177600	Weak transcription	Fetal Brain Male	brain
35	chr1:46155200-46178800	Weak transcription	Stomach Mucosa	stomach
36	chr1:46155400-46161000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr1:46155400-46163200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:46155400-46163600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr1:46155600-46159000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr1:46155600-46160600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:46155600-46161400	Strong transcription	Brain Germinal Matrix	brain
42	chr1:46155600-46162200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr1:46155600-46163600	Strong transcription	Placenta	Placenta
44	chr1:46155600-46204600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr1:46155800-46158000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr1:46155800-46158600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:46155800-46158600	Weak transcription	Brain Hippocampus Middle	brain
48	chr1:46155800-46158800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr1:46155800-46159200	Strong transcription	NHEK	skin
50	chr1:46155800-46163600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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