The 2.0 version of rSNPBase

Variant report

Variant rs28441217
Chromosome Location chr1:46185682-46185683
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46154600-46188600 Weak transcription Fetal Heart heart
2 chr1:46154600-46206600 Weak transcription Brain Substantia Nigra brain
3 chr1:46154800-46186000 Weak transcription Psoas Muscle Psoas
4 chr1:46154800-46192600 Weak transcription Pancreas Pancrea
5 chr1:46155000-46187000 Weak transcription NHLF lung
6 chr1:46155000-46215800 Weak transcription Small Intestine intestine
7 chr1:46155600-46204600 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr1:46155800-46188400 Weak transcription Hela-S3 cervix
9 chr1:46155800-46215600 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr1:46156800-46203800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr1:46157400-46209800 Weak transcription Brain Cingulate Gyrus brain
12 chr1:46159800-46186800 Weak transcription HSMMtube muscle
13 chr1:46159800-46188000 Weak transcription Right Ventricle heart
14 chr1:46159800-46194800 Weak transcription Brain Inferior Temporal Lobe brain
15 chr1:46160400-46186800 Weak transcription NH-A brain
16 chr1:46160600-46188600 Weak transcription iPS-20b Cell Line embryonic stem cell
17 chr1:46160800-46215400 Weak transcription Brain Hippocampus Middle brain
18 chr1:46161000-46196200 Weak transcription NHEK skin
19 chr1:46161200-46192800 Weak transcription Spleen Spleen
20 chr1:46161200-46196000 Weak transcription GM12878-XiMat blood
21 chr1:46161200-46206600 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr1:46161400-46192000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr1:46162200-46192600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr1:46162600-46186600 Weak transcription NHDF-Ad bronchial
25 chr1:46162600-46191400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr1:46163000-46186800 Weak transcription HSMM muscle
27 chr1:46163600-46186200 Weak transcription Brain Anterior Caudate brain
28 chr1:46163600-46196200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:46163600-46197400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr1:46163600-46215600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
31 chr1:46165600-46207000 Weak transcription Colon Smooth Muscle Colon
32 chr1:46165800-46188400 Weak transcription K562 blood
33 chr1:46171200-46185800 Weak transcription HepG2 liver
34 chr1:46174600-46192600 Weak transcription Thymus Thymus
35 chr1:46174600-46192800 Weak transcription Placenta Amnion Placenta Amnion
36 chr1:46174600-46206400 Weak transcription Brain Germinal Matrix brain
37 chr1:46174600-46215600 Weak transcription Brain Angular Gyrus brain
38 chr1:46174600-46215600 Weak transcription Esophagus oesophagus
39 chr1:46175000-46196400 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr1:46177800-46192800 Weak transcription Rectal Smooth Muscle rectum
41 chr1:46177800-46215600 Weak transcription Gastric stomach
42 chr1:46178000-46192600 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr1:46178000-46195800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:46178000-46195800 Weak transcription Fetal Kidney kidney
45 chr1:46178000-46209200 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr1:46178000-46209800 Weak transcription Fetal Brain Male brain
47 chr1:46178000-46209800 Weak transcription Lung lung
48 chr1:46178000-46215600 Weak transcription Aorta Aorta
49 chr1:46178400-46188600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr1:46178400-46192000 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015