The 2.0 version of rSNPBase

Variant report

Variant rs28617418
Chromosome Location chr1:46189526-46189527
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46154600-46206600 Weak transcription Brain Substantia Nigra brain
2 chr1:46154800-46192600 Weak transcription Pancreas Pancrea
3 chr1:46155000-46215800 Weak transcription Small Intestine intestine
4 chr1:46155600-46204600 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr1:46155800-46215600 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr1:46156800-46203800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr1:46157400-46209800 Weak transcription Brain Cingulate Gyrus brain
8 chr1:46159800-46194800 Weak transcription Brain Inferior Temporal Lobe brain
9 chr1:46160800-46215400 Weak transcription Brain Hippocampus Middle brain
10 chr1:46161000-46196200 Weak transcription NHEK skin
11 chr1:46161200-46192800 Weak transcription Spleen Spleen
12 chr1:46161200-46196000 Weak transcription GM12878-XiMat blood
13 chr1:46161200-46206600 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr1:46161400-46192000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr1:46162200-46192600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr1:46162600-46191400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr1:46163600-46196200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr1:46163600-46197400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr1:46163600-46215600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr1:46165600-46207000 Weak transcription Colon Smooth Muscle Colon
21 chr1:46174600-46192600 Weak transcription Thymus Thymus
22 chr1:46174600-46192800 Weak transcription Placenta Amnion Placenta Amnion
23 chr1:46174600-46206400 Weak transcription Brain Germinal Matrix brain
24 chr1:46174600-46215600 Weak transcription Brain Angular Gyrus brain
25 chr1:46174600-46215600 Weak transcription Esophagus oesophagus
26 chr1:46175000-46196400 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr1:46177800-46192800 Weak transcription Rectal Smooth Muscle rectum
28 chr1:46177800-46215600 Weak transcription Gastric stomach
29 chr1:46178000-46192600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:46178000-46195800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr1:46178000-46195800 Weak transcription Fetal Kidney kidney
32 chr1:46178000-46209200 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr1:46178000-46209800 Weak transcription Fetal Brain Male brain
34 chr1:46178000-46209800 Weak transcription Lung lung
35 chr1:46178000-46215600 Weak transcription Aorta Aorta
36 chr1:46178400-46192000 Weak transcription Duodenum Mucosa Duodenum
37 chr1:46179600-46206400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr1:46179600-46209000 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr1:46180200-46192000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:46180400-46192600 Weak transcription Fetal Thymus thymus
41 chr1:46180400-46215600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr1:46180800-46193400 Weak transcription Dnd41 blood
43 chr1:46181200-46191800 Weak transcription Fetal Stomach stomach
44 chr1:46181600-46192800 Weak transcription Placenta Placenta
45 chr1:46181800-46215600 Weak transcription Fetal Brain Female brain
46 chr1:46182000-46192400 Weak transcription Fetal Muscle Trunk muscle
47 chr1:46182000-46192800 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr1:46182000-46193200 Weak transcription Stomach Smooth Muscle stomach
49 chr1:46182000-46203200 Weak transcription Skeletal Muscle Female skeletal muscle
50 chr1:46182000-46206600 Weak transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015