The 2.0 version of rSNPBase

Variant report

Variant rs28862324
Chromosome Location chr1:46187920-46187921
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46154600-46188600 Weak transcription Fetal Heart heart
2 chr1:46154600-46206600 Weak transcription Brain Substantia Nigra brain
3 chr1:46154800-46192600 Weak transcription Pancreas Pancrea
4 chr1:46155000-46215800 Weak transcription Small Intestine intestine
5 chr1:46155600-46204600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:46155800-46188400 Weak transcription Hela-S3 cervix
7 chr1:46155800-46215600 Weak transcription Primary T killer naive cells fromperipheralblood blood
8 chr1:46156800-46203800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr1:46157400-46209800 Weak transcription Brain Cingulate Gyrus brain
10 chr1:46159800-46188000 Weak transcription Right Ventricle heart
11 chr1:46159800-46194800 Weak transcription Brain Inferior Temporal Lobe brain
12 chr1:46160600-46188600 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr1:46160800-46215400 Weak transcription Brain Hippocampus Middle brain
14 chr1:46161000-46196200 Weak transcription NHEK skin
15 chr1:46161200-46192800 Weak transcription Spleen Spleen
16 chr1:46161200-46196000 Weak transcription GM12878-XiMat blood
17 chr1:46161200-46206600 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr1:46161400-46192000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr1:46162200-46192600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr1:46162600-46191400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
21 chr1:46163600-46196200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr1:46163600-46197400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr1:46163600-46215600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr1:46165600-46207000 Weak transcription Colon Smooth Muscle Colon
25 chr1:46165800-46188400 Weak transcription K562 blood
26 chr1:46174600-46192600 Weak transcription Thymus Thymus
27 chr1:46174600-46192800 Weak transcription Placenta Amnion Placenta Amnion
28 chr1:46174600-46206400 Weak transcription Brain Germinal Matrix brain
29 chr1:46174600-46215600 Weak transcription Brain Angular Gyrus brain
30 chr1:46174600-46215600 Weak transcription Esophagus oesophagus
31 chr1:46175000-46196400 Weak transcription HUES6 Cell Line embryonic stem cell
32 chr1:46177800-46192800 Weak transcription Rectal Smooth Muscle rectum
33 chr1:46177800-46215600 Weak transcription Gastric stomach
34 chr1:46178000-46192600 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr1:46178000-46195800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr1:46178000-46195800 Weak transcription Fetal Kidney kidney
37 chr1:46178000-46209200 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr1:46178000-46209800 Weak transcription Fetal Brain Male brain
39 chr1:46178000-46209800 Weak transcription Lung lung
40 chr1:46178000-46215600 Weak transcription Aorta Aorta
41 chr1:46178400-46188600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr1:46178400-46192000 Weak transcription Duodenum Mucosa Duodenum
43 chr1:46179600-46206400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr1:46179600-46209000 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr1:46180200-46192000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr1:46180400-46192600 Weak transcription Fetal Thymus thymus
47 chr1:46180400-46215600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr1:46180800-46193400 Weak transcription Dnd41 blood
49 chr1:46181200-46191800 Weak transcription Fetal Stomach stomach
50 chr1:46181600-46192800 Weak transcription Placenta Placenta

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Last update: Aug 31, 2015