The 2.0 version of rSNPBase

Variant report

Variant rs28501477
Chromosome Location chr1:46199084-46199085
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46154600-46206600 Weak transcription Brain Substantia Nigra brain
2 chr1:46155000-46215800 Weak transcription Small Intestine intestine
3 chr1:46155600-46204600 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr1:46155800-46215600 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr1:46156800-46203800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr1:46157400-46209800 Weak transcription Brain Cingulate Gyrus brain
7 chr1:46160800-46215400 Weak transcription Brain Hippocampus Middle brain
8 chr1:46161200-46206600 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:46163600-46215600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr1:46165600-46207000 Weak transcription Colon Smooth Muscle Colon
11 chr1:46174600-46206400 Weak transcription Brain Germinal Matrix brain
12 chr1:46174600-46215600 Weak transcription Brain Angular Gyrus brain
13 chr1:46174600-46215600 Weak transcription Esophagus oesophagus
14 chr1:46177800-46215600 Weak transcription Gastric stomach
15 chr1:46178000-46209200 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr1:46178000-46209800 Weak transcription Fetal Brain Male brain
17 chr1:46178000-46209800 Weak transcription Lung lung
18 chr1:46178000-46215600 Weak transcription Aorta Aorta
19 chr1:46179600-46206400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:46179600-46209000 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:46180400-46215600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr1:46181800-46215600 Weak transcription Fetal Brain Female brain
23 chr1:46182000-46203200 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr1:46182000-46206600 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:46182200-46215600 Weak transcription Left Ventricle heart
26 chr1:46182400-46206600 Weak transcription Primary B cells from cord blood blood
27 chr1:46182400-46206600 Weak transcription Adipose Nuclei Adipose
28 chr1:46184400-46201200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:46184400-46203200 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr1:46185000-46206600 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr1:46187200-46206800 Weak transcription Fetal Lung lung
32 chr1:46187400-46203800 Weak transcription Primary T cells from cord blood blood
33 chr1:46187400-46206600 Weak transcription HSMM muscle
34 chr1:46189200-46214800 Weak transcription NHDF-Ad bronchial
35 chr1:46189400-46207600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr1:46189400-46215400 Weak transcription Muscle Satellite Cultured Cells --
37 chr1:46192600-46206600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr1:46193000-46203200 Weak transcription Spleen Spleen
39 chr1:46193000-46209200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:46193400-46206200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr1:46193400-46207600 Weak transcription Fetal Muscle Trunk muscle
42 chr1:46193400-46208000 Weak transcription Thymus Thymus
43 chr1:46193600-46206400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:46193600-46206400 Weak transcription Liver Liver
45 chr1:46193600-46206400 Weak transcription Rectal Mucosa Donor 29 rectum
46 chr1:46193600-46207800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr1:46193600-46215400 Weak transcription Rectal Smooth Muscle rectum
48 chr1:46193600-46215400 Weak transcription HSMMtube muscle
49 chr1:46193800-46206400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr1:46193800-46207600 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015