The 2.0 version of rSNPBase

Variant report

Variant rs28844317
Chromosome Location chr1:46209207-46209208
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46155000-46215800 Weak transcription Small Intestine intestine
2 chr1:46155800-46215600 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:46157400-46209800 Weak transcription Brain Cingulate Gyrus brain
4 chr1:46160800-46215400 Weak transcription Brain Hippocampus Middle brain
5 chr1:46163600-46215600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
6 chr1:46174600-46215600 Weak transcription Brain Angular Gyrus brain
7 chr1:46174600-46215600 Weak transcription Esophagus oesophagus
8 chr1:46177800-46215600 Weak transcription Gastric stomach
9 chr1:46178000-46209800 Weak transcription Fetal Brain Male brain
10 chr1:46178000-46209800 Weak transcription Lung lung
11 chr1:46178000-46215600 Weak transcription Aorta Aorta
12 chr1:46180400-46215600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr1:46181800-46215600 Weak transcription Fetal Brain Female brain
14 chr1:46182200-46215600 Weak transcription Left Ventricle heart
15 chr1:46189200-46214800 Weak transcription NHDF-Ad bronchial
16 chr1:46189400-46215400 Weak transcription Muscle Satellite Cultured Cells --
17 chr1:46193600-46215400 Weak transcription Rectal Smooth Muscle rectum
18 chr1:46193600-46215400 Weak transcription HSMMtube muscle
19 chr1:46194000-46214200 Weak transcription Pancreas Pancrea
20 chr1:46194000-46214800 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr1:46196800-46215400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr1:46196800-46215600 Weak transcription NHEK skin
23 chr1:46197000-46214800 Weak transcription GM12878-XiMat blood
24 chr1:46198000-46214200 Weak transcription Right Ventricle heart
25 chr1:46198000-46215600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:46203400-46215600 Weak transcription Spleen Spleen
27 chr1:46203600-46214800 Weak transcription NH-A brain
28 chr1:46204200-46215600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
29 chr1:46204800-46214800 Weak transcription Psoas Muscle Psoas
30 chr1:46205200-46212400 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr1:46205200-46214800 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr1:46205200-46215400 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr1:46205200-46215400 Weak transcription HepG2 liver
34 chr1:46205400-46215400 Weak transcription A549 lung
35 chr1:46205400-46215600 Weak transcription Stomach Mucosa stomach
36 chr1:46205400-46215600 Weak transcription NHLF lung
37 chr1:46206200-46211000 Strong transcription Primary T helper naive cells fromperipheralblood blood
38 chr1:46206400-46210800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:46206400-46211000 Strong transcription Primary B cells from peripheral blood blood
40 chr1:46206400-46211000 Strong transcription Liver Liver
41 chr1:46206600-46210000 Strong transcription Fetal Thymus thymus
42 chr1:46206600-46211000 Strong transcription Primary T cells fromperipheralblood blood
43 chr1:46206600-46211000 Strong transcription Fetal Intestine Large intestine
44 chr1:46206600-46212000 Strong transcription Primary T regulatory cells fromperipheralblood blood
45 chr1:46206600-46212000 Strong transcription Duodenum Mucosa Duodenum
46 chr1:46206600-46212000 Strong transcription Fetal Muscle Leg muscle
47 chr1:46206600-46212000 Strong transcription Stomach Smooth Muscle stomach
48 chr1:46206800-46215600 Weak transcription iPS-20b Cell Line embryonic stem cell
49 chr1:46207000-46209800 Weak transcription Fetal Lung lung
50 chr1:46207000-46210000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015