Variant report

Variant	rs2277486
Chromosome Location	chr14:24721687-24721688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24717325..24723149-chr14:24733278..24737314,6	K562	blood:
2	chr14:24719690..24722490-chr14:24911291..24913138,2	MCF-7	breast:
3	chr14:24710456..24715181-chr14:24717112..24722262,8	K562	blood:
4	chr14:24656273..24659288-chr14:24719775..24722749,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100445	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000092330	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000092295	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11625433	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12050103	1.00[EUR][1000 genomes]
rs2273303	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783442	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41294732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8193034	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24712200-24723200	Weak transcription	Gastric	stomach
2	chr14:24712200-24724200	Weak transcription	Ovary	ovary
3	chr14:24712600-24727600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:24712600-24740000	Weak transcription	Small Intestine	intestine
5	chr14:24712800-24723800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:24713000-24722000	Weak transcription	Fetal Brain Female	brain
7	chr14:24713000-24723000	Weak transcription	Brain Angular Gyrus	brain
8	chr14:24713000-24723200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr14:24713000-24723400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:24713000-24723400	Weak transcription	Pancreas	Pancrea
11	chr14:24713000-24734200	Weak transcription	Left Ventricle	heart
12	chr14:24713000-24740000	Weak transcription	Right Atrium	heart
13	chr14:24713200-24722000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:24713200-24723000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:24713200-24723200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr14:24713200-24723200	Weak transcription	Thymus	Thymus
17	chr14:24713200-24723400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr14:24713200-24723800	Weak transcription	Aorta	Aorta
19	chr14:24713200-24723800	Weak transcription	Colonic Mucosa	Colon
20	chr14:24713200-24723800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr14:24713200-24723800	Weak transcription	Right Ventricle	heart
22	chr14:24713200-24724200	Weak transcription	Adipose Nuclei	Adipose
23	chr14:24713200-24725600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr14:24713200-24727800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr14:24713200-24727800	Weak transcription	Hela-S3	cervix
26	chr14:24713200-24728000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr14:24713200-24728200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr14:24713200-24728200	Weak transcription	Fetal Muscle Leg	muscle
29	chr14:24713200-24728200	Weak transcription	NHLF	lung
30	chr14:24713200-24732600	Weak transcription	Fetal Thymus	thymus
31	chr14:24713200-24734400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:24713200-24734600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:24713200-24734600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr14:24713200-24734600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr14:24713200-24734800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr14:24713200-24734800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr14:24713200-24735400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr14:24713400-24723400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr14:24713400-24726000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:24713800-24722800	Weak transcription	Placenta	Placenta
41	chr14:24716200-24722800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:24716400-24722000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr14:24716400-24723400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:24716400-24724200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr14:24716400-24733800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr14:24716400-24734000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr14:24716400-24735800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr14:24716400-24739800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr14:24716600-24722000	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr14:24716600-24722000	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links