Variant report

Variant	rs41294732
Chromosome Location	chr14:24716669-24716670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24715794-24717686	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24708910..24714808-chr14:24716113..24720760,9	K562	blood:
2	chr14:24685223..24686912-chr14:24715857..24717913,2	K562	blood:

Variant related genes	Relation type
TINF2	TF binding region
ENSG00000213920	Chromatin interaction
ENSG00000092330	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11622001	0.81[ASN][1000 genomes]
rs11625426	0.81[ASN][1000 genomes]
rs11625433	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12050103	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2273303	1.00[EUR][1000 genomes]
rs2277486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3783442	1.00[EUR][1000 genomes]
rs8193034	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24712200-24723200	Weak transcription	Gastric	stomach
2	chr14:24712200-24724200	Weak transcription	Ovary	ovary
3	chr14:24712600-24720600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:24712600-24727600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:24712600-24740000	Weak transcription	Small Intestine	intestine
6	chr14:24712800-24717200	Weak transcription	Esophagus	oesophagus
7	chr14:24712800-24718200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:24712800-24721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:24712800-24723800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:24713000-24718400	Weak transcription	Fetal Stomach	stomach
11	chr14:24713000-24722000	Weak transcription	Fetal Brain Female	brain
12	chr14:24713000-24723000	Weak transcription	Brain Angular Gyrus	brain
13	chr14:24713000-24723200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr14:24713000-24723400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:24713000-24723400	Weak transcription	Pancreas	Pancrea
16	chr14:24713000-24734200	Weak transcription	Left Ventricle	heart
17	chr14:24713000-24740000	Weak transcription	Right Atrium	heart
18	chr14:24713200-24717600	Weak transcription	Fetal Brain Male	brain
19	chr14:24713200-24718200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:24713200-24718200	Weak transcription	Lung	lung
21	chr14:24713200-24718600	Weak transcription	Primary T cells from cord blood	blood
22	chr14:24713200-24720600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:24713200-24720600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:24713200-24720800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:24713200-24720800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:24713200-24721000	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:24713200-24721000	Weak transcription	HMEC	breast
28	chr14:24713200-24721000	Weak transcription	NHEK	skin
29	chr14:24713200-24721200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:24713200-24721400	Weak transcription	Brain Anterior Caudate	brain
31	chr14:24713200-24722000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr14:24713200-24723000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:24713200-24723200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr14:24713200-24723200	Weak transcription	Thymus	Thymus
35	chr14:24713200-24723400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr14:24713200-24723800	Weak transcription	Aorta	Aorta
37	chr14:24713200-24723800	Weak transcription	Colonic Mucosa	Colon
38	chr14:24713200-24723800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr14:24713200-24723800	Weak transcription	Right Ventricle	heart
40	chr14:24713200-24724200	Weak transcription	Adipose Nuclei	Adipose
41	chr14:24713200-24725600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr14:24713200-24727800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:24713200-24727800	Weak transcription	Hela-S3	cervix
44	chr14:24713200-24728000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr14:24713200-24728200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr14:24713200-24728200	Weak transcription	Fetal Muscle Leg	muscle
47	chr14:24713200-24728200	Weak transcription	NHLF	lung
48	chr14:24713200-24732600	Weak transcription	Fetal Thymus	thymus
49	chr14:24713200-24734400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:24713200-24734600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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