Variant report

Variant	rs2278370
Chromosome Location	chr5:150930186-150930187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1465690	0.85[CEU][hapmap];0.89[CHB][hapmap];0.95[MEX][hapmap];0.92[AMR][1000 genomes]
rs1469680	0.88[AMR][1000 genomes]
rs1897564	0.85[AMR][1000 genomes]
rs1966639	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2278371	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3097778	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3097780	0.92[AMR][1000 genomes]
rs3097827	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150889000-150932600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr5:150901800-150935600	Weak transcription	Fetal Intestine Small	intestine
3	chr5:150905800-150934000	Weak transcription	Adipose Nuclei	Adipose
4	chr5:150908200-150948000	Strong transcription	HMEC	breast
5	chr5:150908400-150933400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:150908400-150944000	Strong transcription	NHEK	skin
7	chr5:150909200-150942400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:150911600-150942800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:150914200-150935600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:150914200-150938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:150918200-150945400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:150924600-150935600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:150928800-150931400	Strong transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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