Variant report

Variant	rs1465690
Chromosome Location	chr5:150946966-150946967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1368369	0.82[ASN][1000 genomes]
rs1432864	0.83[ASN][1000 genomes]
rs1469680	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1897564	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1966639	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2278370	0.85[CEU][hapmap];0.89[CHB][hapmap];0.95[MEX][hapmap];0.92[AMR][1000 genomes]
rs2278371	0.85[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.92[AMR][1000 genomes]
rs3097778	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3097780	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3097827	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7723204	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20633	chr5:150941705-150955343	Strong transcription Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150908200-150948000	Strong transcription	HMEC	breast
2	chr5:150934200-150949600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:150937000-150948600	Weak transcription	Right Atrium	heart
4	chr5:150937600-150948600	Weak transcription	Adipose Nuclei	Adipose
5	chr5:150942600-150948400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:150944000-150948400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:150945000-150947600	Strong transcription	Esophagus	oesophagus
8	chr5:150945400-150948400	Strong transcription	NHEK	skin
9	chr5:150946000-150948400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:150946000-150948800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:150946400-150948000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:150946800-150947600	Active TSS	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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