Variant report

Variant	rs7723204
Chromosome Location	chr5:150967539-150967540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1368369	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1368370	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1432864	0.83[ASN][1000 genomes]
rs1465690	1.00[CHB][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.81[ASN][1000 genomes]
rs1469680	0.83[ASN][1000 genomes]
rs2278370	0.89[CHB][hapmap];0.90[MEX][hapmap]
rs2278371	0.83[CHB][hapmap];0.85[MEX][hapmap]
rs2881557	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3097778	0.89[CHB][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap]
rs4958460	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7723204	C5orf4	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150961800-150968600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:150961800-150970400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:150962600-150968000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:150964400-150975000	Weak transcription	HSMMtube	muscle
5	chr5:150965800-150967600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:150965800-150968800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:150966000-150969200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:150966000-150969600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:150966000-150969600	Weak transcription	HSMM	muscle
10	chr5:150966000-151002000	Weak transcription	Right Atrium	heart
11	chr5:150966200-150967800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:150966200-150968800	Weak transcription	Adipose Nuclei	Adipose
13	chr5:150966200-150969800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr5:150966200-150972400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:150966800-150969200	Transcr. at gene 5' and 3'	NHEK	skin
16	chr5:150967000-150968800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:150967400-150967800	Genic enhancers	Esophagus	oesophagus
18	chr5:150967400-150968000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr5:150967400-150969000	Transcr. at gene 5' and 3'	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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