Variant report

Variant	rs1368370
Chromosome Location	chr5:150965975-150965976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:150965412..150967281-chr5:150969711..150971989,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1368369	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1465690	0.94[CHB][hapmap]
rs2278370	0.84[CHB][hapmap]
rs2881557	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3097778	0.84[CHB][hapmap]
rs4958460	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7723204	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7736460	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1368370	C5orf4	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150959600-150967400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:150961800-150968600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:150961800-150970400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:150962600-150968000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:150964400-150975000	Weak transcription	HSMMtube	muscle
6	chr5:150964800-150966600	Enhancers	Fetal Muscle Leg	muscle
7	chr5:150965400-150966000	Genic enhancers	Esophagus	oesophagus
8	chr5:150965400-150966000	Enhancers	Placenta	Placenta
9	chr5:150965400-150966000	Enhancers	HSMM	muscle
10	chr5:150965400-150966200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:150965400-150966200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr5:150965400-150966400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:150965400-150966400	Transcr. at gene 5' and 3'	NHEK	skin
14	chr5:150965600-150966000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:150965600-150966000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:150965600-150966000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:150965600-150966200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:150965600-150966200	Enhancers	Adipose Nuclei	Adipose
19	chr5:150965600-150966200	Enhancers	Psoas Muscle	Psoas
20	chr5:150965600-150966600	Enhancers	Fetal Muscle Trunk	muscle
21	chr5:150965800-150966000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:150965800-150966000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:150965800-150966000	Enhancers	Brain Cingulate Gyrus	brain
24	chr5:150965800-150966000	Enhancers	Right Atrium	heart
25	chr5:150965800-150966200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:150965800-150966200	Flanking Active TSS	HMEC	breast
27	chr5:150965800-150967600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:150965800-150968800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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