Variant report

Variant	rs3097778
Chromosome Location	chr5:150938507-150938508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1465690	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1469680	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1897564	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1966639	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2278370	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2278371	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[MEX][hapmap];0.88[AMR][1000 genomes]
rs2881557	0.85[ASN][1000 genomes]
rs2915822	1.00[ASW][hapmap]
rs3097780	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3097827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4958460	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150908200-150948000	Strong transcription	HMEC	breast
2	chr5:150908400-150944000	Strong transcription	NHEK	skin
3	chr5:150909200-150942400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:150911600-150942800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:150914200-150938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:150918200-150945400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:150931000-150942800	Weak transcription	Brain Angular Gyrus	brain
8	chr5:150934200-150949600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:150935400-150938800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr5:150935600-150939400	Enhancers	Placenta	Placenta
11	chr5:150936000-150938800	Weak transcription	Spleen	Spleen
12	chr5:150936000-150940800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:150936600-150938600	Weak transcription	Esophagus	oesophagus
14	chr5:150937000-150948600	Weak transcription	Right Atrium	heart
15	chr5:150937400-150939600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:150937600-150940800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:150937600-150948600	Weak transcription	Adipose Nuclei	Adipose
18	chr5:150938200-150938600	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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