Variant report

Variant	rs2881557
Chromosome Location	chr5:150956426-150956427
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1368369	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1368370	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1465690	0.94[CHB][hapmap]
rs1897564	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1966639	0.89[ASN][1000 genomes]
rs2278370	0.94[CHB][hapmap]
rs2278371	0.89[CHB][hapmap]
rs3097778	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs3097827	0.86[ASN][1000 genomes]
rs4958460	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7723204	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150951200-150960400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:150951400-150959600	Weak transcription	Placenta	Placenta
3	chr5:150951600-150960400	Genic enhancers	NHEK	skin
4	chr5:150952600-150957000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:150953600-150956800	Weak transcription	Fetal Thymus	thymus
6	chr5:150954000-150959600	Weak transcription	Esophagus	oesophagus
7	chr5:150955600-150957000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:150955600-150959600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:150955800-150956800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:150955800-150957000	Enhancers	Primary B cells from cord blood	blood
11	chr5:150955800-150957000	Weak transcription	HMEC	breast
12	chr5:150956000-150957200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:150956200-150956600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr5:150956200-150957200	Enhancers	Primary T cells from cord blood	blood
15	chr5:150956200-150958800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr5:150956400-150956600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:150956400-150957200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr5:150956400-150957800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr5:150956400-150958000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr5:150956400-150958800	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links