Variant report

Variant	rs1432864
Chromosome Location	chr5:150951743-150951744
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
FAT2	TF binding region
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction
ENSG00000086570	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1368369	0.84[ASN][1000 genomes]
rs1465690	0.83[ASN][1000 genomes]
rs1469680	0.84[ASN][1000 genomes]
rs4958460	0.80[ASN][1000 genomes]
rs7723204	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20633	chr5:150941705-150955343	Strong transcription Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv600038	chr5:150950853-150955127	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150948400-150953600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:150948400-150953600	Enhancers	Fetal Thymus	thymus
3	chr5:150948600-150952600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:150951200-150952000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:150951200-150952200	Enhancers	HMEC	breast
6	chr5:150951200-150953600	Weak transcription	Esophagus	oesophagus
7	chr5:150951200-150960400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:150951400-150953400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:150951400-150959600	Weak transcription	Placenta	Placenta
10	chr5:150951600-150955800	Weak transcription	Primary B cells from cord blood	blood
11	chr5:150951600-150956400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:150951600-150960400	Genic enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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