Variant report

Variant	rs2281063
Chromosome Location	chr6:11298263-11298264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11290862..11293594-chr6:11296720..11298470,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12663156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883240	0.91[EUR][1000 genomes]
rs2064111	0.82[ASN][1000 genomes]
rs4368799	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713396	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6918500	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7762842	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9468839	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11278600-11299000	Weak transcription	Pancreas	Pancrea
2	chr6:11279000-11305000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:11286600-11300200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:11289000-11299400	Weak transcription	Gastric	stomach
5	chr6:11290600-11299800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:11292600-11305600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:11293000-11298400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:11293000-11299800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:11293200-11299200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:11293200-11299200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:11293200-11305200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:11293200-11307600	Weak transcription	Placenta	Placenta
13	chr6:11295000-11299000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:11295200-11299200	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr6:11295600-11298400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:11296400-11299000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:11296400-11310200	Weak transcription	Spleen	Spleen
18	chr6:11296400-11310400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:11296600-11299000	Weak transcription	Lung	lung
20	chr6:11296600-11299200	Weak transcription	Thymus	Thymus
21	chr6:11296600-11299600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr6:11296800-11305000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:11297000-11300200	Strong transcription	Primary B cells from cord blood	blood
24	chr6:11297000-11310200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:11297400-11298400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr6:11297400-11299000	Weak transcription	Fetal Thymus	thymus
27	chr6:11297600-11300000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr6:11297800-11298800	Weak transcription	A549	lung
29	chr6:11297800-11299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:11297800-11299000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:11297800-11299000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:11297800-11299000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:11297800-11299000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:11297800-11299400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:11297800-11299400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:11297800-11299400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:11297800-11305200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:11298000-11298600	Enhancers	GM12878-XiMat	blood
39	chr6:11298000-11299000	Enhancers	HepG2	liver
40	chr6:11298000-11299200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:11298000-11299200	Weak transcription	Stomach Mucosa	stomach
42	chr6:11298000-11299400	Weak transcription	Primary T cells from cord blood	blood
43	chr6:11298000-11303800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr6:11298200-11310400	Weak transcription	Rectal Mucosa Donor 29	rectum

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