Variant report

Variant	rs4368799
Chromosome Location	chr6:11302653-11302654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11294505..11297284-chr6:11301885..11303392,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12663156	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1883240	0.91[EUR][1000 genomes]
rs2064111	0.83[ASN][1000 genomes]
rs2281063	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713396	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6918500	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7762842	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9468839	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11279000-11305000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:11292600-11305600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:11293200-11305200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:11293200-11307600	Weak transcription	Placenta	Placenta
5	chr6:11296400-11310200	Weak transcription	Spleen	Spleen
6	chr6:11296400-11310400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:11296800-11305000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:11297000-11310200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:11297800-11305200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:11298000-11303800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:11298200-11310400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:11299600-11305200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:11299600-11310600	Weak transcription	Thymus	Thymus
14	chr6:11299800-11305000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:11299800-11305000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:11299800-11314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:11300000-11304400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr6:11300000-11305000	Weak transcription	Fetal Thymus	thymus
19	chr6:11300200-11304800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:11300200-11305000	Weak transcription	Primary B cells from cord blood	blood
21	chr6:11300200-11305000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr6:11300200-11305000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:11300200-11305000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:11300200-11305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:11300200-11305400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:11300200-11310400	Weak transcription	Gastric	stomach
27	chr6:11300200-11310400	Weak transcription	Lung	lung
28	chr6:11302200-11303800	Weak transcription	Primary T cells from cord blood	blood
29	chr6:11302200-11305200	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links