Variant report

Variant	rs6918500
Chromosome Location	chr6:11314553-11314554
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11230191..11234687-chr6:11312195..11319542,11	MCF-7	breast:
2	chr6:11231155..11233005-chr6:11312964..11316514,3	MCF-7	breast:
3	chr6:11311300..11313647-chr6:11314495..11317056,3	MCF-7	breast:
4	chr6:11308195..11312483-chr6:11313916..11317993,6	MCF-7	breast:
5	chr6:11313707..11316163-chr6:11342424..11344651,2	MCF-7	breast:
6	chr6:11251383..11252973-chr6:11314441..11316599,2	MCF-7	breast:
7	chr6:11252992..11255266-chr6:11314178..11316876,2	MCF-7	breast:
8	chr6:11207669..11210620-chr6:11314180..11315786,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12663156	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1883240	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2064111	0.97[ASN][1000 genomes]
rs2281063	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4368799	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713396	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713401	0.82[ASN][1000 genomes]
rs6923444	0.85[ASN][1000 genomes]
rs7762842	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9468839	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11305800-11319400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:11306000-11319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11306200-11318000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:11306400-11318000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:11306400-11319400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:11306400-11326800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:11306600-11318200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:11306600-11319200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:11307000-11315400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:11307000-11316400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:11307000-11319400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:11307200-11317800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:11307400-11316400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:11308000-11317800	Weak transcription	GM12878-XiMat	blood
15	chr6:11310800-11315600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:11310800-11316000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:11310800-11316000	Weak transcription	Small Intestine	intestine
18	chr6:11310800-11316200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:11310800-11316200	Weak transcription	HepG2	liver
20	chr6:11310800-11317800	Weak transcription	Lung	lung
21	chr6:11310800-11319600	Weak transcription	Gastric	stomach
22	chr6:11310800-11323000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:11311000-11315400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr6:11311000-11323800	Weak transcription	Fetal Thymus	thymus
25	chr6:11311200-11317000	Weak transcription	Thymus	Thymus
26	chr6:11311400-11317800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:11311400-11317800	Weak transcription	Placenta	Placenta
28	chr6:11311600-11317800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr6:11312200-11319600	Strong transcription	Primary T cells from cord blood	blood
30	chr6:11312800-11315000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:11312800-11318200	Weak transcription	Spleen	Spleen
32	chr6:11313800-11318800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:11313800-11320200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr6:11314200-11315000	Weak transcription	Primary B cells from cord blood	blood
35	chr6:11314400-11316600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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