Variant report

Variant	rs2281819
Chromosome Location	chr6:33771673-33771674
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1075379	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11753083	0.89[EUR][1000 genomes]
rs11754690	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11755593	0.88[EUR][1000 genomes]
rs11757524	0.89[EUR][1000 genomes]
rs11758463	0.90[EUR][1000 genomes]
rs12524768	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs12524835	0.88[EUR][1000 genomes]
rs1887340	0.86[EUR][1000 genomes]
rs2395400	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs2894342	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711345	0.85[JPT][hapmap]
rs4711346	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4713677	0.86[JPT][hapmap]
rs55775340	0.89[EUR][1000 genomes]
rs59137082	0.83[EUR][1000 genomes]
rs61394483	0.89[EUR][1000 genomes]
rs61662306	0.89[EUR][1000 genomes]
rs6904716	0.87[JPT][hapmap]
rs6910736	0.82[EUR][1000 genomes]
rs6921487	0.88[EUR][1000 genomes]
rs6930201	0.86[EUR][1000 genomes]
rs6933174	0.89[EUR][1000 genomes]
rs6933568	0.89[EUR][1000 genomes]
rs6933607	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs6940353	0.89[EUR][1000 genomes]
rs72880511	0.86[EUR][1000 genomes]
rs73412140	0.89[EUR][1000 genomes]
rs73746509	0.88[EUR][1000 genomes]
rs747692	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs751096	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs755495	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs767896	0.93[JPT][hapmap]
rs7755323	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs943461	0.89[EUR][1000 genomes]
rs943462	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs943466	0.94[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33757600-33775800	Weak transcription	Right Atrium	heart
2	chr6:33766000-33776000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:33766800-33776400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:33768800-33772400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:33769000-33772200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:33769200-33773200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:33770000-33773000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:33770400-33776000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:33770600-33776200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:33770800-33772200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:33770800-33774400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:33771000-33776200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:33771400-33771800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:33771400-33772400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:33771400-33773200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:33771400-33777000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:33771600-33772400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:33771600-33772800	Enhancers	Fetal Intestine Large	intestine
19	chr6:33771600-33772800	Enhancers	Fetal Intestine Small	intestine
20	chr6:33771600-33774800	Weak transcription	Brain Germinal Matrix	brain

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