Variant report

Variant	rs2395400
Chromosome Location	chr6:33770076-33770077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33758412..33760501-chr6:33767524..33770306,2	MCF-7	breast:
2	chr6:33767158..33770119-chr6:33775833..33777551,2	MCF-7	breast:
3	chr6:33767719..33770571-chr6:33780655..33782252,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1075379	0.90[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11753083	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11754690	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11755593	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11757524	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11758463	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12524768	0.87[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12524835	0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1887340	0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs2281819	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs2894342	0.94[CEU][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3763253	0.94[CEU][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3828783	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4711346	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55775340	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59137082	0.87[EUR][1000 genomes]
rs61394483	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61662306	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6910736	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6921487	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6930201	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6933174	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6933568	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6933607	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6940353	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72880511	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73412140	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73746509	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs747692	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs751096	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs755495	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7755323	0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943461	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs943462	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs943466	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33757600-33775800	Weak transcription	Right Atrium	heart
2	chr6:33763600-33771600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:33765800-33770200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:33766000-33770200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:33766000-33776000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:33766800-33776400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:33768400-33770600	Weak transcription	NHDF-Ad	bronchial
8	chr6:33768800-33772400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:33769000-33771400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:33769000-33772200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:33769200-33771600	Enhancers	Brain Germinal Matrix	brain
12	chr6:33769200-33773200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:33769400-33770200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:33769400-33770600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:33769400-33770800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:33769600-33770400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:33769600-33770800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:33769600-33770800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:33769600-33771000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:33769800-33770600	Enhancers	Fetal Brain Male	brain
21	chr6:33769800-33770800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:33770000-33770200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr6:33770000-33770200	Enhancers	Lung	lung
24	chr6:33770000-33770400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:33770000-33771200	Enhancers	Fetal Muscle Leg	muscle
26	chr6:33770000-33773000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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