Variant report

Variant	rs2282951
Chromosome Location	chr7:87687549-87687550
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10235694	0.85[CEU][hapmap]
rs10282572	0.85[CEU][hapmap]
rs10435251	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10952906	0.85[AFR][1000 genomes]
rs11772873	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11972409	0.82[CEU][hapmap]
rs12535365	0.81[AFR][1000 genomes]
rs12669586	0.85[CEU][hapmap]
rs12671587	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12704380	0.81[CEU][hapmap]
rs1637488	0.82[CEU][hapmap]
rs1637489	0.82[CEU][hapmap]
rs1637497	0.82[CEU][hapmap]
rs1637499	0.82[CEU][hapmap]
rs1688886	0.81[CEU][hapmap]
rs1688888	0.81[CEU][hapmap]
rs1688890	0.82[CEU][hapmap]
rs1688891	0.82[CEU][hapmap]
rs1688899	0.82[CEU][hapmap]
rs1688901	0.82[CEU][hapmap]
rs1688902	0.81[CEU][hapmap]
rs17150161	0.86[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs17339970	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2021741	0.82[CEU][hapmap]
rs2022160	0.85[CEU][hapmap]
rs2022163	0.82[CEU][hapmap]
rs2022555	0.86[CEU][hapmap];0.90[YRI][hapmap]
rs2023533	0.82[CEU][hapmap]
rs2024018	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs2079422	0.85[CEU][hapmap];0.80[CHB][hapmap]
rs2097917	0.89[CEU][hapmap]
rs2108087	0.82[CEU][hapmap]
rs2158766	0.82[CEU][hapmap];0.89[YRI][hapmap]
rs2282948	0.82[CEU][hapmap]
rs2282949	0.82[CEU][hapmap]
rs2282955	0.84[CHB][hapmap];0.80[AMR][1000 genomes]
rs2373486	0.87[AFR][1000 genomes]
rs2373487	0.86[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs4442059	0.88[ASN][1000 genomes]
rs4728731	0.89[CHB][hapmap]
rs55637099	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56050913	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56399147	0.80[AMR][1000 genomes]
rs56897831	0.84[AFR][1000 genomes]
rs58850563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60069756	0.87[AFR][1000 genomes]
rs62486383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62486407	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62486409	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6958024	0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7777040	0.85[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7799148	0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7802934	0.87[AFR][1000 genomes]
rs9641021	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3346397	chr7:87687350-87702944	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2282951	ADAM22	cis	Muscle Skeletal	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87676800-87688600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:87685800-87688800	Enhancers	Fetal Lung	lung
3	chr7:87686000-87690200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:87686800-87688400	Enhancers	Brain Angular Gyrus	brain
5	chr7:87687400-87688200	Enhancers	Brain Hippocampus Middle	brain

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