Variant report

Variant	rs12535365
Chromosome Location	chr7:87725522-87725523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10234048	0.87[EUR][1000 genomes]
rs10234412	0.86[EUR][1000 genomes]
rs10435251	0.81[AFR][1000 genomes]
rs10952910	0.87[EUR][1000 genomes]
rs10952913	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11768853	0.92[EUR][1000 genomes]
rs11772873	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12535312	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12537586	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12540117	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12670301	0.87[EUR][1000 genomes]
rs12671587	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12673545	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17339970	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2008834	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2008840	0.83[EUR][1000 genomes]
rs2097918	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2237540	0.87[EUR][1000 genomes]
rs2237541	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2282951	0.81[AFR][1000 genomes]
rs2282955	0.87[EUR][1000 genomes]
rs2282956	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2282957	0.87[EUR][1000 genomes]
rs2299198	0.92[EUR][1000 genomes]
rs2299199	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2299200	0.91[EUR][1000 genomes]
rs3753103	0.93[EUR][1000 genomes]
rs4442059	0.88[EUR][1000 genomes]
rs4727151	0.87[EUR][1000 genomes]
rs4728731	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs55637099	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs56050913	0.81[AFR][1000 genomes]
rs56399147	0.88[EUR][1000 genomes]
rs58850563	0.81[AFR][1000 genomes]
rs61598739	0.83[EUR][1000 genomes]
rs62486383	0.81[AFR][1000 genomes]
rs62486407	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62486408	0.87[EUR][1000 genomes]
rs62486409	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6951172	0.87[EUR][1000 genomes]
rs6955194	0.87[EUR][1000 genomes]
rs6955696	0.91[EUR][1000 genomes]
rs6957754	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6958024	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6964103	0.87[EUR][1000 genomes]
rs6968026	0.87[EUR][1000 genomes]
rs6971348	0.86[EUR][1000 genomes]
rs7777040	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7792853	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7793308	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7799148	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9632709	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12535365	ADAM22	cis	Muscle Skeletal	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87720600-87731200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:87722000-87730800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:87724600-87730000	Weak transcription	GM12878-XiMat	blood
4	chr7:87725400-87725600	Enhancers	Fetal Muscle Leg	muscle

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