Variant report

Variant	rs7799148
Chromosome Location	chr7:87701778-87701779
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10234048	0.82[CEU][hapmap]
rs10234412	0.84[CEU][hapmap]
rs1023538	0.86[EUR][1000 genomes]
rs10435251	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10464571	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10952913	0.92[CEU][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap]
rs11772873	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12535312	0.88[EUR][1000 genomes]
rs12535365	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12537586	0.88[EUR][1000 genomes]
rs12669586	0.82[CHB][hapmap]
rs12671587	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12673545	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1637489	0.81[YRI][hapmap]
rs17150161	0.86[CHB][hapmap];0.94[YRI][hapmap]
rs17339970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2008834	0.92[CEU][hapmap];0.95[YRI][hapmap]
rs2022555	0.95[YRI][hapmap]
rs2024018	0.95[YRI][hapmap]
rs2097918	0.92[CEU][hapmap];0.94[YRI][hapmap];0.88[EUR][1000 genomes]
rs2158766	0.95[YRI][hapmap]
rs2237541	0.92[CEU][hapmap];0.90[LWK][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2282951	0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2282955	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2282956	0.81[ASW][hapmap];0.92[CEU][hapmap];0.95[YRI][hapmap];0.88[EUR][1000 genomes]
rs2282957	0.82[CEU][hapmap]
rs2299199	0.89[CEU][hapmap]
rs2299200	0.92[CEU][hapmap];0.95[YRI][hapmap]
rs2373487	0.94[YRI][hapmap]
rs3753103	0.92[CEU][hapmap];0.95[YRI][hapmap];0.80[EUR][1000 genomes]
rs4442059	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4727151	0.81[CEU][hapmap]
rs4728731	0.93[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55637099	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56050913	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs56399147	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58850563	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62486383	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62486404	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62486407	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62486409	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6951172	0.82[CEU][hapmap]
rs6955194	0.82[CEU][hapmap]
rs6955696	0.92[CEU][hapmap];0.95[YRI][hapmap]
rs6957754	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6958024	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6968026	0.82[CEU][hapmap]
rs7777040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7792853	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7793308	0.92[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9632709	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3346397	chr7:87687350-87702944	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7799148	ADAM22	cis	Muscle Skeletal	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87701200-87701800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:87701200-87702200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:87701200-87702200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:87701200-87702200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:87701200-87702200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:87701400-87702000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:87701400-87702000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:87701600-87702000	Active TSS	GM12878-XiMat	blood
9	chr7:87701600-87702200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:87701600-87704800	Enhancers	Fetal Lung	lung
11	chr7:87701600-87705000	Enhancers	Dnd41	blood

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