Variant report

Variant	rs6957754
Chromosome Location	chr7:87742134-87742135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10234048	0.81[EUR][1000 genomes]
rs10952910	0.81[EUR][1000 genomes]
rs10952913	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11768853	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11772873	0.83[AFR][1000 genomes]
rs12535312	0.93[EUR][1000 genomes]
rs12535365	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12537586	0.93[EUR][1000 genomes]
rs12540117	0.84[EUR][1000 genomes]
rs12670301	0.81[EUR][1000 genomes]
rs17339970	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2008834	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2097918	0.93[EUR][1000 genomes]
rs2237540	0.81[EUR][1000 genomes]
rs2237541	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282956	0.93[EUR][1000 genomes]
rs2282957	0.81[EUR][1000 genomes]
rs2299198	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2299199	0.84[EUR][1000 genomes]
rs2299200	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3753103	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4442059	0.80[EUR][1000 genomes]
rs4727151	0.80[EUR][1000 genomes]
rs55637099	0.80[AFR][1000 genomes]
rs56399147	0.80[EUR][1000 genomes]
rs62486407	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62486408	0.80[EUR][1000 genomes]
rs62486409	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6951172	0.80[EUR][1000 genomes]
rs6955194	0.81[EUR][1000 genomes]
rs6955696	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6958024	0.80[AFR][1000 genomes]
rs6964103	0.81[EUR][1000 genomes]
rs6968026	0.81[EUR][1000 genomes]
rs7777040	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7792853	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793308	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799148	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9632709	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6957754	ADAM22	cis	Muscle Skeletal	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87739000-87745600	Weak transcription	Psoas Muscle	Psoas
2	chr7:87741200-87743000	Enhancers	Fetal Stomach	stomach
3	chr7:87741200-87782600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:87741600-87742400	Enhancers	Fetal Lung	lung
5	chr7:87741800-87744600	Enhancers	Fetal Muscle Leg	muscle
6	chr7:87741800-87744800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links