Variant report

Variant	rs228469
Chromosome Location	chr1:79706577-79706578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs170611	0.85[AMR][1000 genomes]
rs170612	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17102981	0.80[AMR][1000 genomes]
rs183458	0.81[AMR][1000 genomes]
rs228466	0.85[AMR][1000 genomes]
rs228468	0.85[AMR][1000 genomes]
rs228470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228472	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228473	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228476	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228482	0.84[AMR][1000 genomes]
rs228483	0.84[AMR][1000 genomes]
rs228484	0.90[AMR][1000 genomes]
rs228485	0.89[AMR][1000 genomes]
rs228486	0.90[AMR][1000 genomes]
rs228487	0.85[AMR][1000 genomes]
rs228489	0.90[AMR][1000 genomes]
rs228500	0.80[AMR][1000 genomes]
rs228502	0.80[AMR][1000 genomes]
rs228503	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs228504	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs228506	0.80[AMR][1000 genomes]
rs228508	0.80[AMR][1000 genomes]
rs228511	0.80[AMR][1000 genomes]
rs228514	0.80[AMR][1000 genomes]
rs228515	0.80[AMR][1000 genomes]
rs228517	0.80[AMR][1000 genomes]
rs228520	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs228521	0.81[AMR][1000 genomes]
rs228532	0.81[AMR][1000 genomes]
rs228533	0.81[AMR][1000 genomes]
rs228536	0.81[AMR][1000 genomes]
rs228538	0.81[AMR][1000 genomes]
rs228540	0.81[AMR][1000 genomes]
rs228544	0.81[AMR][1000 genomes]
rs35764284	0.81[AMR][1000 genomes]
rs368460	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417181	0.85[AMR][1000 genomes]
rs418641	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428585	0.85[AMR][1000 genomes]
rs4650312	0.86[AMR][1000 genomes]
rs4650402	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4650403	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61766097	0.80[AMR][1000 genomes]
rs6424643	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6424644	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6674681	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6697527	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7520891	0.85[AMR][1000 genomes]
rs7551723	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79705800-79710000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links