Variant report

Variant	rs6424643
Chromosome Location	chr1:79719757-79719758
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs170611	0.85[AMR][1000 genomes]
rs17102981	0.80[AMR][1000 genomes]
rs183458	0.81[AMR][1000 genomes]
rs228466	0.85[AMR][1000 genomes]
rs228468	0.85[AMR][1000 genomes]
rs228469	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs228470	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs228472	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs228473	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs228476	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs228482	0.84[AMR][1000 genomes]
rs228483	0.84[AMR][1000 genomes]
rs228484	0.90[AMR][1000 genomes]
rs228485	0.89[AMR][1000 genomes]
rs228486	0.90[AMR][1000 genomes]
rs228487	0.85[AMR][1000 genomes]
rs228489	0.90[AMR][1000 genomes]
rs228500	0.80[AMR][1000 genomes]
rs228502	0.80[AMR][1000 genomes]
rs228506	0.80[AMR][1000 genomes]
rs228508	0.80[AMR][1000 genomes]
rs228511	0.80[AMR][1000 genomes]
rs228514	0.80[AMR][1000 genomes]
rs228515	0.80[AMR][1000 genomes]
rs228517	0.80[AMR][1000 genomes]
rs35764284	0.81[AMR][1000 genomes]
rs368460	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs417181	0.85[AMR][1000 genomes]
rs418641	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs428585	0.85[AMR][1000 genomes]
rs4650312	0.86[AMR][1000 genomes]
rs4650402	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4650403	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61766097	0.80[AMR][1000 genomes]
rs6424644	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6674681	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6697527	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7520891	0.85[AMR][1000 genomes]
rs7551723	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79717000-79720600	Weak transcription	Stomach Mucosa	stomach
2	chr1:79719200-79725400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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