Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10235650	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10276002	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12707360	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13242243	0.87[ASN][1000 genomes]
rs13247935	0.80[CHB][hapmap]
rs1358447	0.82[MEX][hapmap]
rs1525049	0.82[MEX][hapmap]
rs1528096	0.80[CHB][hapmap]
rs1528098	0.80[CHB][hapmap]
rs1646366	0.82[MEX][hapmap]
rs1646372	0.82[MEX][hapmap]
rs1646389	0.82[MEX][hapmap]
rs1723093	0.82[MEX][hapmap]
rs1723100	0.82[MEX][hapmap]
rs1728443	0.91[MEX][hapmap]
rs1728498	0.82[MEX][hapmap]
rs2293549	0.82[MEX][hapmap]
rs2692008	0.90[MEX][hapmap]
rs28434741	0.87[ASN][1000 genomes]
rs34395849	0.88[ASN][1000 genomes]
rs35080869	0.85[ASN][1000 genomes]
rs35470018	0.87[ASN][1000 genomes]
rs57998109	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6467704	0.87[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6964837	0.82[MEX][hapmap]
rs73730628	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7778455	0.80[CHB][hapmap]
rs7779526	0.87[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7792957	0.80[CHB][hapmap]
rs7797211	0.80[CHB][hapmap]
rs834054	0.82[MEX][hapmap]
rs834073	0.82[MEX][hapmap]
rs834082	0.82[MEX][hapmap]
rs834086	0.82[MEX][hapmap]
rs834087	0.82[MEX][hapmap]
rs834092	0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv520950	chr7:137154572-137167984	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137139800-137165000	Weak transcription	Fetal Brain Female	brain
2	chr7:137147800-137160600	Weak transcription	NH-A	brain
3	chr7:137148000-137160400	Weak transcription	Brain Anterior Caudate	brain
4	chr7:137148200-137161800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:137148400-137160400	Weak transcription	HSMMtube	muscle
6	chr7:137148400-137160800	Weak transcription	HSMM	muscle
7	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
8	chr7:137149600-137160600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:137149600-137161600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:137150800-137160600	Weak transcription	Osteobl	bone
11	chr7:137151200-137160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:137152000-137159400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:137152000-137179400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:137153400-137156000	Enhancers	Fetal Heart	heart
15	chr7:137153600-137154600	Enhancers	HUVEC	blood vessel
16	chr7:137154000-137154600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:137154000-137155000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:137154200-137154600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr7:137154200-137155000	Enhancers	Right Atrium	heart

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