Variant report

Variant	rs13247935
Chromosome Location	chr7:137150382-137150383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10223988	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10235650	0.93[CHB][hapmap]
rs10276002	0.93[CHB][hapmap]
rs12707360	0.93[CHB][hapmap]
rs13224598	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13228382	1.00[EUR][1000 genomes]
rs13239327	0.96[EUR][1000 genomes]
rs13239329	1.00[EUR][1000 genomes]
rs13243008	1.00[EUR][1000 genomes]
rs1528096	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1528097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528098	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918840	0.86[CHB][hapmap];0.98[ASN][1000 genomes]
rs1918841	0.98[ASN][1000 genomes]
rs2293545	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293546	0.80[CHB][hapmap]
rs34061919	1.00[EUR][1000 genomes]
rs34366399	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34384461	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34826389	1.00[EUR][1000 genomes]
rs34837511	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35172470	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35217200	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35381443	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35448275	1.00[EUR][1000 genomes]
rs35494361	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35761356	1.00[EUR][1000 genomes]
rs36071642	1.00[EUR][1000 genomes]
rs58342329	1.00[EUR][1000 genomes]
rs6467704	0.93[CHB][hapmap]
rs6942907	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6958453	1.00[ASN][1000 genomes]
rs6963562	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6963610	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967549	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs71533750	1.00[EUR][1000 genomes]
rs71535299	1.00[EUR][1000 genomes]
rs71541350	1.00[EUR][1000 genomes]
rs71541351	1.00[EUR][1000 genomes]
rs71541352	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71541353	0.93[EUR][1000 genomes]
rs73443783	1.00[EUR][1000 genomes]
rs7778326	0.97[ASN][1000 genomes]
rs7778455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7778621	0.97[ASN][1000 genomes]
rs7779526	0.93[CHB][hapmap]
rs7792957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7797211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7800431	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137139000-137150800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:137139800-137165000	Weak transcription	Fetal Brain Female	brain
3	chr7:137140000-137152600	Weak transcription	Fetal Brain Male	brain
4	chr7:137147000-137150600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:137147600-137151200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:137147600-137152400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137147800-137152000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:137147800-137160600	Weak transcription	NH-A	brain
9	chr7:137148000-137160400	Weak transcription	Brain Anterior Caudate	brain
10	chr7:137148200-137161800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:137148400-137151000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:137148400-137160400	Weak transcription	HSMMtube	muscle
13	chr7:137148400-137160800	Weak transcription	HSMM	muscle
14	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
15	chr7:137149400-137150600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:137149400-137152600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:137149600-137150400	Weak transcription	Osteobl	bone
18	chr7:137149600-137160600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:137149600-137161600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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