Variant report

Variant	rs6963562
Chromosome Location	chr7:137146625-137146626
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13224598	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13228382	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13239327	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13239329	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13243008	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13247935	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1528097	1.00[EUR][1000 genomes]
rs1528098	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2293545	1.00[EUR][1000 genomes]
rs34061919	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34366399	1.00[EUR][1000 genomes]
rs34384461	1.00[EUR][1000 genomes]
rs34826389	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34837511	1.00[EUR][1000 genomes]
rs35172470	1.00[EUR][1000 genomes]
rs35217200	1.00[EUR][1000 genomes]
rs35381443	1.00[EUR][1000 genomes]
rs35448275	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35494361	1.00[EUR][1000 genomes]
rs35761356	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36071642	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58342329	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6942907	1.00[CEU][hapmap];0.97[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6963610	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6967549	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71533750	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71535299	1.00[EUR][1000 genomes]
rs71541350	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71541351	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71541352	1.00[EUR][1000 genomes]
rs71541353	0.93[EUR][1000 genomes]
rs73443783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137125000-137147600	Weak transcription	Aorta	Aorta
2	chr7:137139000-137150800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:137139400-137147600	Weak transcription	Adipose Nuclei	Adipose
4	chr7:137139800-137149600	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:137139800-137165000	Weak transcription	Fetal Brain Female	brain
6	chr7:137140000-137147200	Weak transcription	HSMM	muscle
7	chr7:137140000-137147400	Weak transcription	HSMMtube	muscle
8	chr7:137140000-137152600	Weak transcription	Fetal Brain Male	brain
9	chr7:137140400-137146800	Weak transcription	Osteobl	bone
10	chr7:137143600-137147200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:137145400-137146800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr7:137145800-137147000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:137146200-137147000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:137146400-137147200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:137146400-137147200	Enhancers	NHDF-Ad	bronchial
16	chr7:137146400-137147400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:137146400-137147400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:137146400-137147400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr7:137146400-137147800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr7:137146400-137147800	Enhancers	NH-A	brain
21	chr7:137146600-137147000	Weak transcription	HMEC	breast
22	chr7:137146600-137147400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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