Variant report

Variant	rs34826389
Chromosome Location	chr7:137148067-137148068
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13224598	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13228382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13239327	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13239329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13243008	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13247935	1.00[EUR][1000 genomes]
rs1528097	1.00[EUR][1000 genomes]
rs1528098	1.00[EUR][1000 genomes]
rs2293545	1.00[EUR][1000 genomes]
rs34061919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34366399	1.00[EUR][1000 genomes]
rs34384461	1.00[EUR][1000 genomes]
rs34837511	1.00[EUR][1000 genomes]
rs35172470	1.00[EUR][1000 genomes]
rs35217200	1.00[EUR][1000 genomes]
rs35381443	1.00[EUR][1000 genomes]
rs35448275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35494361	1.00[EUR][1000 genomes]
rs35761356	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36071642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58342329	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6942907	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6963562	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6963610	1.00[EUR][1000 genomes]
rs6967549	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71533750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71535299	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71541350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71541351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71541352	1.00[EUR][1000 genomes]
rs71541353	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73443783	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137139000-137150800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:137139800-137149600	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:137139800-137165000	Weak transcription	Fetal Brain Female	brain
4	chr7:137140000-137152600	Weak transcription	Fetal Brain Male	brain
5	chr7:137147000-137150600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:137147200-137148200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:137147200-137149400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:137147400-137148400	ZNF genes & repeats	HSMMtube	muscle
9	chr7:137147600-137148200	Strong transcription	Adipose Nuclei	Adipose
10	chr7:137147600-137148400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:137147600-137148600	Strong transcription	Aorta	Aorta
12	chr7:137147600-137151200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:137147600-137152400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:137147800-137148400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:137147800-137148400	Strong transcription	HSMM	muscle
16	chr7:137147800-137149200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:137147800-137149400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:137147800-137152000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:137147800-137160600	Weak transcription	NH-A	brain
20	chr7:137148000-137149600	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr7:137148000-137149600	Strong transcription	Osteobl	bone
22	chr7:137148000-137160400	Weak transcription	Brain Anterior Caudate	brain

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