Variant report

Variant	rs71535299
Chromosome Location	chr7:137147714-137147715
allele	CAAATGCTGTAC/TAAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13224598	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13228382	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13239327	0.96[EUR][1000 genomes]
rs13239329	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13243008	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13247935	1.00[EUR][1000 genomes]
rs1528097	1.00[EUR][1000 genomes]
rs1528098	1.00[EUR][1000 genomes]
rs2293545	1.00[EUR][1000 genomes]
rs34061919	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34366399	1.00[EUR][1000 genomes]
rs34384461	1.00[EUR][1000 genomes]
rs34551407	0.82[AMR][1000 genomes]
rs34826389	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34837511	1.00[EUR][1000 genomes]
rs35172470	1.00[EUR][1000 genomes]
rs35217200	1.00[EUR][1000 genomes]
rs35381443	1.00[EUR][1000 genomes]
rs35448275	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35494361	1.00[EUR][1000 genomes]
rs35761356	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36071642	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36076622	0.82[AMR][1000 genomes]
rs58342329	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6942907	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6963562	1.00[EUR][1000 genomes]
rs6963610	1.00[EUR][1000 genomes]
rs6967549	1.00[EUR][1000 genomes]
rs71533750	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71541350	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71541351	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71541352	1.00[EUR][1000 genomes]
rs71541353	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71541354	0.82[AMR][1000 genomes]
rs73443783	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137139000-137150800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:137139800-137149600	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:137139800-137165000	Weak transcription	Fetal Brain Female	brain
4	chr7:137140000-137152600	Weak transcription	Fetal Brain Male	brain
5	chr7:137146400-137147800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:137146400-137147800	Enhancers	NH-A	brain
7	chr7:137146800-137147800	Enhancers	HUVEC	blood vessel
8	chr7:137147000-137148000	Enhancers	HMEC	breast
9	chr7:137147000-137150600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:137147200-137147800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:137147200-137147800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:137147200-137147800	Genic enhancers	HSMM	muscle
13	chr7:137147200-137147800	Flanking Active TSS	NHDF-Ad	bronchial
14	chr7:137147200-137148200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:137147200-137149400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:137147400-137147800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:137147400-137147800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:137147400-137147800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:137147400-137147800	Bivalent Enhancer	NHEK	skin
20	chr7:137147400-137147800	Transcr. at gene 5' and 3'	Osteobl	bone
21	chr7:137147400-137148000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:137147400-137148000	Genic enhancers	Muscle Satellite Cultured Cells	--
23	chr7:137147400-137148000	Enhancers	Brain Anterior Caudate	brain
24	chr7:137147400-137148400	ZNF genes & repeats	HSMMtube	muscle
25	chr7:137147600-137148200	Strong transcription	Adipose Nuclei	Adipose
26	chr7:137147600-137148400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:137147600-137148600	Strong transcription	Aorta	Aorta
28	chr7:137147600-137151200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:137147600-137152400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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