Variant report

Variant	rs7778455
Chromosome Location	chr7:137141231-137141232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137140016..137142000-chr7:137144609..137146610,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10223988	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10235650	0.93[CHB][hapmap]
rs10276002	0.93[CHB][hapmap]
rs12707360	0.93[CHB][hapmap]
rs13247935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1528096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1528097	0.97[ASN][1000 genomes]
rs1528098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1918840	0.86[CHB][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1918841	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2293545	0.97[ASN][1000 genomes]
rs2293546	0.80[CHB][hapmap]
rs34366399	0.97[ASN][1000 genomes]
rs34384461	0.97[ASN][1000 genomes]
rs34837511	0.97[ASN][1000 genomes]
rs35172470	0.96[ASN][1000 genomes]
rs35217200	0.97[ASN][1000 genomes]
rs35381443	0.96[ASN][1000 genomes]
rs35494361	0.97[ASN][1000 genomes]
rs6467704	0.93[CHB][hapmap]
rs6958453	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6963610	0.97[ASN][1000 genomes]
rs71541352	0.96[ASN][1000 genomes]
rs7778326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7778621	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7779526	0.93[CHB][hapmap]
rs7792957	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7797211	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7800431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137125000-137147600	Weak transcription	Aorta	Aorta
2	chr7:137139000-137143000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:137139000-137150800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:137139400-137147600	Weak transcription	Adipose Nuclei	Adipose
5	chr7:137139800-137141800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:137139800-137143000	Weak transcription	HMEC	breast
7	chr7:137139800-137149600	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:137139800-137165000	Weak transcription	Fetal Brain Female	brain
9	chr7:137140000-137142200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:137140000-137147200	Weak transcription	HSMM	muscle
11	chr7:137140000-137147400	Weak transcription	HSMMtube	muscle
12	chr7:137140000-137152600	Weak transcription	Fetal Brain Male	brain
13	chr7:137140200-137146000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:137140200-137146400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:137140200-137146400	Weak transcription	NH-A	brain
16	chr7:137140200-137146400	Weak transcription	NHDF-Ad	bronchial
17	chr7:137140400-137146400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:137140400-137146800	Weak transcription	Osteobl	bone
19	chr7:137140800-137145800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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