Variant report

Variant	rs2293873
Chromosome Location	chr14:70936714-70936715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10467821	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11850330	0.85[AFR][1000 genomes]
rs1959485	0.85[AFR][1000 genomes]
rs2293876	0.81[AMR][1000 genomes]
rs28473545	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28763369	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4899354	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4899357	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4902822	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56321313	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7144992	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7152848	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7153448	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7153459	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8006200	0.85[AFR][1000 genomes]
rs9652366	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv983841	chr14:70935862-70939179	Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70910600-70955600	Weak transcription	Left Ventricle	heart
2	chr14:70917000-70940200	Weak transcription	Aorta	Aorta
3	chr14:70921800-70940000	Weak transcription	Psoas Muscle	Psoas
4	chr14:70932400-70937600	Weak transcription	Adipose Nuclei	Adipose
5	chr14:70933400-70941200	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:70934000-70937600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:70934200-70943800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:70934600-70937000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:70935400-70940200	Weak transcription	Liver	Liver
10	chr14:70935600-70938200	Weak transcription	Brain Angular Gyrus	brain
11	chr14:70935800-70937000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:70936000-70943800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr14:70936600-70939200	Weak transcription	Duodenum Smooth Muscle	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links