Variant report

Variant	rs7153459
Chromosome Location	chr14:70937420-70937421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10138243	0.92[ASN][1000 genomes]
rs10142102	0.83[CHB][hapmap]
rs10148586	0.83[CHB][hapmap]
rs10150707	0.88[CHB][hapmap]
rs10438162	0.95[ASN][1000 genomes]
rs10467821	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11844845	0.89[CHB][hapmap]
rs11850330	0.90[ASN][1000 genomes]
rs12589009	0.90[ASN][1000 genomes]
rs12889741	1.00[CHB][hapmap]
rs1573802	0.91[ASN][1000 genomes]
rs1953798	0.80[CHD][hapmap]
rs1959483	0.80[CHD][hapmap]
rs1959485	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.81[YRI][hapmap];0.94[ASN][1000 genomes]
rs2095804	0.95[ASN][1000 genomes]
rs2293873	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2293876	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2332387	0.93[ASN][1000 genomes]
rs2332425	0.89[ASN][1000 genomes]
rs28473545	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28763369	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2877657	0.84[CHB][hapmap]
rs4377098	0.92[ASN][1000 genomes]
rs4899354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4899357	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902815	0.95[CHB][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap]
rs4902822	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56321313	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6573964	0.92[ASN][1000 genomes]
rs6573966	0.88[ASN][1000 genomes]
rs7144478	0.95[CHB][hapmap]
rs7144992	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145424	0.86[ASN][1000 genomes]
rs7145656	0.92[ASN][1000 genomes]
rs7152848	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153448	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161251	0.90[ASN][1000 genomes]
rs8006200	0.91[ASN][1000 genomes]
rs8014179	1.00[CHB][hapmap]
rs9323536	0.83[CHB][hapmap]
rs9652366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9743775	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv983841	chr14:70935862-70939179	Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70910600-70955600	Weak transcription	Left Ventricle	heart
2	chr14:70917000-70940200	Weak transcription	Aorta	Aorta
3	chr14:70921800-70940000	Weak transcription	Psoas Muscle	Psoas
4	chr14:70932400-70937600	Weak transcription	Adipose Nuclei	Adipose
5	chr14:70933400-70941200	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:70934000-70937600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:70934200-70943800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:70935400-70940200	Weak transcription	Liver	Liver
9	chr14:70935600-70938200	Weak transcription	Brain Angular Gyrus	brain
10	chr14:70936000-70943800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr14:70936600-70939200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:70936800-70939800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr14:70937000-70937600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr14:70937000-70938200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:70937000-70939800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr14:70937200-70937600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:70937400-70937800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:70937400-70938400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr14:70937400-70939200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr14:70937400-70939200	Enhancers	HUES6 Cell Line	embryonic stem cell

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