Variant report

Variant	rs7145424
Chromosome Location	chr14:70966189-70966190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10138243	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10438162	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10467821	0.84[ASN][1000 genomes]
rs11850330	0.90[ASN][1000 genomes]
rs12589009	0.91[ASN][1000 genomes]
rs1573802	0.91[ASN][1000 genomes]
rs1959485	0.90[ASN][1000 genomes]
rs2095804	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2293876	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2332387	0.84[ASN][1000 genomes]
rs2332425	0.89[ASN][1000 genomes]
rs28473545	0.86[ASN][1000 genomes]
rs28763369	0.92[ASN][1000 genomes]
rs4377098	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899354	0.86[ASN][1000 genomes]
rs4899357	0.91[ASN][1000 genomes]
rs4902822	0.84[ASN][1000 genomes]
rs56321313	0.86[ASN][1000 genomes]
rs6573964	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573966	0.93[ASN][1000 genomes]
rs7144992	0.84[ASN][1000 genomes]
rs7145656	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7152848	0.85[ASN][1000 genomes]
rs7153448	0.86[ASN][1000 genomes]
rs7153459	0.86[ASN][1000 genomes]
rs7161251	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8006200	0.91[ASN][1000 genomes]
rs8013505	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9652366	0.86[ASN][1000 genomes]
rs9743775	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70956600-70966600	Weak transcription	Left Ventricle	heart
2	chr14:70958600-70966600	Weak transcription	Brain Anterior Caudate	brain
3	chr14:70958600-70967200	Weak transcription	Brain Angular Gyrus	brain
4	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr14:70964200-70967200	Weak transcription	Liver	Liver
7	chr14:70965000-70966600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:70965000-70966800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:70965000-70968200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr14:70965200-70982000	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links