Variant report

Variant	rs11850330
Chromosome Location	chr14:70958109-70958110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr14:70958107-70958668	HEK293	kidney:	n/a	n/a
2	SETDB1	chr14:70957973-70958610	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
RNU6-659P	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10138243	0.98[ASN][1000 genomes]
rs10438162	0.95[ASN][1000 genomes]
rs10467821	0.85[ASN][1000 genomes]
rs12589009	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1573802	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1959485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2095804	0.95[ASN][1000 genomes]
rs2293873	0.85[AFR][1000 genomes]
rs2293876	0.89[ASN][1000 genomes]
rs2332387	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2332425	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28473545	0.88[ASN][1000 genomes]
rs28763369	0.98[ASN][1000 genomes]
rs4377098	0.98[ASN][1000 genomes]
rs4899354	0.90[ASN][1000 genomes]
rs4899357	0.96[ASN][1000 genomes]
rs4902822	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs56321313	0.90[ASN][1000 genomes]
rs59788049	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6573964	0.98[ASN][1000 genomes]
rs6573966	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7144992	0.88[ASN][1000 genomes]
rs7145424	0.90[ASN][1000 genomes]
rs7145656	0.98[ASN][1000 genomes]
rs7150601	0.82[AMR][1000 genomes]
rs7152848	0.89[ASN][1000 genomes]
rs7153448	0.90[ASN][1000 genomes]
rs7153459	0.90[ASN][1000 genomes]
rs7161251	0.96[ASN][1000 genomes]
rs8006200	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9652366	0.90[ASN][1000 genomes]
rs9743452	0.90[AMR][1000 genomes]
rs9743775	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70954800-70958600	ZNF genes & repeats	Lung	lung
2	chr14:70954800-70958800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr14:70955000-70958600	ZNF genes & repeats	Aorta	Aorta
4	chr14:70955000-70959200	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr14:70955400-70959200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr14:70955600-70965600	Weak transcription	Right Ventricle	heart
7	chr14:70955800-70958600	ZNF genes & repeats	Ovary	ovary
8	chr14:70955800-70958800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:70955800-70959200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
10	chr14:70956000-70958600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
11	chr14:70956000-70959200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr14:70956200-70958600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
13	chr14:70956200-70958600	ZNF genes & repeats	Brain Anterior Caudate	brain
14	chr14:70956400-70958400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr14:70956400-70958600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:70956600-70966600	Weak transcription	Left Ventricle	heart
17	chr14:70956800-70958800	ZNF genes & repeats	Liver	Liver
18	chr14:70956800-70961800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr14:70957000-70958200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr14:70957200-70958800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
21	chr14:70957400-70958400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
22	chr14:70957400-70958600	ZNF genes & repeats	Brain Angular Gyrus	brain
23	chr14:70957600-70963200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:70957800-70958200	ZNF genes & repeats	HSMMtube	muscle
25	chr14:70957800-70958800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr14:70958000-70958200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:70958000-70958600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:70958000-70958600	ZNF genes & repeats	Gastric	stomach
29	chr14:70958000-70958600	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr14:70958000-70958800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr14:70958000-70958800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
32	chr14:70958000-70959200	ZNF genes & repeats	Brain Hippocampus Middle	brain

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