Variant report

Variant	rs2095804
Chromosome Location	chr14:70956775-70956776
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10138243	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10438162	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467821	0.90[ASN][1000 genomes]
rs11850330	0.95[ASN][1000 genomes]
rs12589009	0.95[ASN][1000 genomes]
rs1573802	0.96[ASN][1000 genomes]
rs1959485	0.99[ASN][1000 genomes]
rs2293876	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2332387	0.90[ASN][1000 genomes]
rs2332425	0.94[ASN][1000 genomes]
rs28473545	0.93[ASN][1000 genomes]
rs28763369	0.97[ASN][1000 genomes]
rs4377098	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4899354	0.95[ASN][1000 genomes]
rs4899357	0.95[ASN][1000 genomes]
rs4902822	0.93[ASN][1000 genomes]
rs56321313	0.95[ASN][1000 genomes]
rs6573964	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573966	0.93[ASN][1000 genomes]
rs7144992	0.93[ASN][1000 genomes]
rs7145424	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7145656	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7152848	0.94[ASN][1000 genomes]
rs7153448	0.95[ASN][1000 genomes]
rs7153459	0.95[ASN][1000 genomes]
rs7161251	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8006200	0.96[ASN][1000 genomes]
rs9652366	0.95[ASN][1000 genomes]
rs9743775	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70951400-70957600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr14:70954400-70957400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:70954800-70958600	ZNF genes & repeats	Lung	lung
4	chr14:70954800-70958800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr14:70955000-70957800	Weak transcription	HSMMtube	muscle
6	chr14:70955000-70958600	ZNF genes & repeats	Aorta	Aorta
7	chr14:70955000-70959200	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr14:70955400-70959200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr14:70955600-70957200	Strong transcription	Stomach Smooth Muscle	stomach
10	chr14:70955600-70965600	Weak transcription	Right Ventricle	heart
11	chr14:70955800-70956800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:70955800-70957000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
13	chr14:70955800-70958600	ZNF genes & repeats	Ovary	ovary
14	chr14:70955800-70958800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:70955800-70959200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr14:70956000-70957000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr14:70956000-70958600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
18	chr14:70956000-70959200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
19	chr14:70956200-70957000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:70956200-70957400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:70956200-70958600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr14:70956200-70958600	ZNF genes & repeats	Brain Anterior Caudate	brain
23	chr14:70956400-70956800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
24	chr14:70956400-70956800	Weak transcription	Liver	Liver
25	chr14:70956400-70956800	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
26	chr14:70956400-70957200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr14:70956400-70958400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr14:70956400-70958600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr14:70956600-70957200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:70956600-70958000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:70956600-70966600	Weak transcription	Left Ventricle	heart

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