Variant report

Variant	rs229577
Chromosome Location	chr14:65274718-65274719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65230550..65232570-chr14:65272647..65274883,2	MCF-7	breast:
2	chr14:65272282..65274917-chr14:65276747..65279585,3	MCF-7	breast:
3	chr14:65272312..65275235-chr14:65380241..65382678,2	K562	blood:

Variant related genes	Relation type
ENSG00000070182	Chromatin interaction
ENSG00000258289	Chromatin interaction
ENSG00000125954	Chromatin interaction

rs_ID	r²[population]
rs17102000	1.00[MEX][hapmap]
rs17102018	1.00[MEX][hapmap]
rs17102019	1.00[MEX][hapmap]
rs17102026	1.00[MEX][hapmap]
rs17102130	0.93[ASW][hapmap];0.83[MKK][hapmap]
rs17102170	1.00[MEX][hapmap]
rs229578	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs229579	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
2	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65271600-65274800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:65271600-65274800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:65272400-65275800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr14:65272600-65274800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:65272600-65274800	Enhancers	Left Ventricle	heart
10	chr14:65272600-65275800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr14:65273000-65279200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:65273200-65274800	Enhancers	Fetal Heart	heart
13	chr14:65273200-65279000	Weak transcription	Pancreas	Pancrea
14	chr14:65273400-65277200	Weak transcription	Aorta	Aorta
15	chr14:65273400-65279000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:65273800-65274800	Enhancers	Right Atrium	heart
17	chr14:65273800-65275000	Enhancers	Right Ventricle	heart
18	chr14:65273800-65275200	Enhancers	Fetal Muscle Leg	muscle
19	chr14:65273800-65279000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:65273800-65287200	Weak transcription	K562	blood
21	chr14:65274000-65274800	Enhancers	A549	lung
22	chr14:65274000-65278200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:65274200-65274800	Enhancers	Lung	lung
24	chr14:65274200-65275000	Enhancers	Fetal Muscle Trunk	muscle
25	chr14:65274200-65275800	Enhancers	Psoas Muscle	Psoas
26	chr14:65274200-65278800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:65274400-65274800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:65274400-65278400	Weak transcription	NHEK	skin
29	chr14:65274600-65276400	Weak transcription	Hela-S3	cervix
30	chr14:65274600-65278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:65274600-65278400	Weak transcription	HMEC	breast
32	chr14:65274600-65279000	Weak transcription	Fetal Thymus	thymus
33	chr14:65274600-65284600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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