Variant report

Variant	rs229578
Chromosome Location	chr14:65273732-65273733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65230550..65232570-chr14:65272647..65274883,2	MCF-7	breast:
2	chr14:65272282..65274917-chr14:65276747..65279585,3	MCF-7	breast:
3	chr14:65272312..65275235-chr14:65380241..65382678,2	K562	blood:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction
ENSG00000070182	Chromatin interaction

rs_ID	r²[population]
rs10137840	0.81[YRI][hapmap]
rs17102000	1.00[MEX][hapmap]
rs17102018	1.00[MEX][hapmap]
rs17102019	1.00[MEX][hapmap]
rs17102026	1.00[MEX][hapmap]
rs17102130	0.93[ASW][hapmap];0.83[MKK][hapmap]
rs17102170	1.00[MEX][hapmap]
rs229577	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs229579	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65232200-65274200	Weak transcription	Gastric	stomach
2	chr14:65252600-65274400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
4	chr14:65258000-65274200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
7	chr14:65269200-65274400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:65270600-65274400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
10	chr14:65271600-65273800	Weak transcription	Right Ventricle	heart
11	chr14:65271600-65274600	Enhancers	HMEC	breast
12	chr14:65271600-65274800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:65271600-65274800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:65271800-65273800	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:65271800-65274000	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr14:65271800-65274200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:65271800-65274200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:65271800-65274200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr14:65271800-65274400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr14:65271800-65274600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:65272000-65274000	Flanking Active TSS	A549	lung
22	chr14:65272200-65273800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr14:65272400-65274600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:65272400-65274600	Enhancers	Hela-S3	cervix
25	chr14:65272400-65274600	Enhancers	HSMM	muscle
26	chr14:65272400-65275800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr14:65272600-65273800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr14:65272600-65273800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr14:65272600-65274000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:65272600-65274000	Enhancers	NHDF-Ad	bronchial
31	chr14:65272600-65274200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr14:65272600-65274200	Enhancers	NHLF	lung
33	chr14:65272600-65274400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:65272600-65274400	Enhancers	HSMMtube	muscle
35	chr14:65272600-65274800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:65272600-65274800	Enhancers	Left Ventricle	heart
37	chr14:65272600-65275800	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr14:65272800-65274000	Flanking Active TSS	NH-A	brain
39	chr14:65272800-65274400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr14:65273000-65279200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr14:65273200-65273800	Weak transcription	Right Atrium	heart
42	chr14:65273200-65273800	Strong transcription	K562	blood
43	chr14:65273200-65274200	Weak transcription	Lung	lung
44	chr14:65273200-65274200	Weak transcription	Psoas Muscle	Psoas
45	chr14:65273200-65274400	Enhancers	NHEK	skin
46	chr14:65273200-65274800	Enhancers	Fetal Heart	heart
47	chr14:65273200-65279000	Weak transcription	Pancreas	Pancrea
48	chr14:65273400-65277200	Weak transcription	Aorta	Aorta
49	chr14:65273400-65279000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr14:65273600-65273800	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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