Variant report

Variant	rs229579
Chromosome Location	chr14:65273162-65273163
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65230550..65232570-chr14:65272647..65274883,2	MCF-7	breast:
2	chr14:65272282..65274917-chr14:65276747..65279585,3	MCF-7	breast:
3	chr14:65263442..65265552-chr14:65270691..65273167,2	K562	blood:
4	chr14:65272312..65275235-chr14:65380241..65382678,2	K562	blood:

Variant related genes	Relation type
ENSG00000070182	Chromatin interaction
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction

rs_ID	r²[population]
rs10137840	0.81[YRI][hapmap]
rs229577	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs229578	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65232200-65274200	Weak transcription	Gastric	stomach
2	chr14:65252600-65274400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
4	chr14:65258000-65274200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:65267400-65273200	Weak transcription	Fetal Heart	heart
7	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
8	chr14:65269200-65274400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:65270600-65274400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
11	chr14:65271600-65273800	Weak transcription	Right Ventricle	heart
12	chr14:65271600-65274600	Enhancers	HMEC	breast
13	chr14:65271600-65274800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:65271600-65274800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:65271800-65273800	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:65271800-65274000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr14:65271800-65274200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:65271800-65274200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:65271800-65274200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr14:65271800-65274400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr14:65271800-65274600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:65272000-65273200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr14:65272000-65273200	Weak transcription	K562	blood
24	chr14:65272000-65274000	Flanking Active TSS	A549	lung
25	chr14:65272200-65273800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:65272400-65273200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr14:65272400-65273400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:65272400-65273400	Enhancers	Aorta	Aorta
29	chr14:65272400-65274600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:65272400-65274600	Enhancers	Hela-S3	cervix
31	chr14:65272400-65274600	Enhancers	HSMM	muscle
32	chr14:65272400-65275800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr14:65272600-65273200	Enhancers	Lung	lung
34	chr14:65272600-65273200	Enhancers	Pancreas	Pancrea
35	chr14:65272600-65273200	Enhancers	Psoas Muscle	Psoas
36	chr14:65272600-65273200	Flanking Active TSS	NHEK	skin
37	chr14:65272600-65273400	Enhancers	H9 Cell Line	embryonic stem cell
38	chr14:65272600-65273400	Enhancers	Stomach Smooth Muscle	stomach
39	chr14:65272600-65273600	Enhancers	Osteobl	bone
40	chr14:65272600-65273800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr14:65272600-65273800	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr14:65272600-65274000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:65272600-65274000	Enhancers	NHDF-Ad	bronchial
44	chr14:65272600-65274200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr14:65272600-65274200	Enhancers	NHLF	lung
46	chr14:65272600-65274400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:65272600-65274400	Enhancers	HSMMtube	muscle
48	chr14:65272600-65274800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:65272600-65274800	Enhancers	Left Ventricle	heart
50	chr14:65272600-65275800	Enhancers	Skeletal Muscle Male	skeletal muscle

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