Variant report

Variant rs2296131
Chromosome Location chr6:1872339-1872340
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:1842800-1872400 Weak transcription Gastric stomach
2 chr6:1851200-1895600 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr6:1851400-1909600 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr6:1857600-1877200 Weak transcription Primary T cells from cord blood blood
5 chr6:1865200-1884600 Weak transcription Small Intestine intestine
6 chr6:1867000-1873800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr6:1868000-1873600 Weak transcription Stomach Mucosa stomach
8 chr6:1869200-1872400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
9 chr6:1869200-1874000 Enhancers iPS-20b Cell Line embryonic stem cell
10 chr6:1869200-1874200 Enhancers HUES64 Cell Line embryonic stem cell
11 chr6:1869200-1874200 Enhancers iPS-15b Cell Line embryonic stem cell
12 chr6:1869400-1873400 Enhancers H1 Cell Line embryonic stem cell
13 chr6:1869400-1873800 Enhancers ES-I3 Cell Line embryonic stem cell
14 chr6:1869400-1873800 Enhancers iPS-18 Cell Line embryonic stem cell
15 chr6:1869400-1874200 Enhancers HUES48 Cell Line embryonic stem cell
16 chr6:1869400-1874400 Enhancers HUES6 Cell Line embryonic stem cell
17 chr6:1869600-1873800 Enhancers H9 Cell Line embryonic stem cell
18 chr6:1870600-1873600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr6:1870600-1874000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr6:1870600-1874200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr6:1870800-1874200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr6:1871000-1874200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr6:1871000-1895400 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr6:1871200-1873800 Weak transcription HepG2 liver
25 chr6:1871200-1874200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
26 chr6:1871200-1874200 Enhancers Fetal Kidney kidney
27 chr6:1871400-1872800 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr6:1871400-1873200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr6:1871400-1873200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr6:1871400-1873200 Enhancers Fetal Lung lung
31 chr6:1871400-1876600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr6:1871600-1872600 Weak transcription Fetal Intestine Small intestine
33 chr6:1871600-1874400 Enhancers Fetal Muscle Leg muscle
34 chr6:1871800-1873200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr6:1871800-1874000 Enhancers Cortex derived primary cultured neurospheres brain
36 chr6:1872000-1872400 Flanking Active TSS Brain Substantia Nigra brain
37 chr6:1872000-1872600 Bivalent Enhancer Fetal Heart heart
38 chr6:1872000-1872800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr6:1872000-1873000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
40 chr6:1872000-1873200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
41 chr6:1872000-1873200 Enhancers HSMMtube muscle
42 chr6:1872000-1873400 Bivalent Enhancer Fetal Stomach stomach
43 chr6:1872000-1873600 Enhancers Duodenum Smooth Muscle Duodenum
44 chr6:1872000-1874200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr6:1872000-1874400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
46 chr6:1872000-1874400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
47 chr6:1872000-1874400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
48 chr6:1872200-1872400 Weak transcription Aorta Aorta
49 chr6:1872200-1872400 Flanking Active TSS Brain Hippocampus Middle brain
50 chr6:1872200-1872400 Flanking Active TSS Brain Inferior Temporal Lobe brain

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