Variant report

Variant	rs2296566
Chromosome Location	chr13:95003355-95003356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17175259	1.00[AMR][1000 genomes]
rs28587431	0.91[ASN][1000 genomes]
rs60277420	0.91[ASN][1000 genomes]
rs60987661	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs74103904	0.87[AMR][1000 genomes]
rs9516401	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9516403	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9524454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9524467	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9524469	0.85[ASN][1000 genomes]
rs9589970	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv456077	chr13:94993032-95051560	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv562755	chr13:94993032-95051560	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94990000-95003600	Weak transcription	Fetal Intestine Small	intestine
2	chr13:94995200-95004400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:94997000-95034400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr13:94998000-95003400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr13:94998000-95003400	Weak transcription	NH-A	brain
6	chr13:94998000-95003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:94998200-95003400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr13:94998200-95003400	Weak transcription	HSMM	muscle
9	chr13:94998200-95003600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:94998200-95003600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:94998200-95003800	Weak transcription	Adipose Nuclei	Adipose
12	chr13:94998400-95003600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr13:94998400-95003600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:94998400-95003600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr13:94998400-95009000	Weak transcription	Fetal Stomach	stomach
16	chr13:94999000-95003600	Weak transcription	Fetal Thymus	thymus
17	chr13:95001000-95004600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr13:95001000-95007000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr13:95002400-95003800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr13:95003000-95003600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:95003000-95003600	Enhancers	Osteobl	bone
22	chr13:95003000-95004000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr13:95003000-95004200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:95003000-95004600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:95003000-95005000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr13:95003000-95005000	Enhancers	NHDF-Ad	bronchial
27	chr13:95003200-95003800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:95003200-95003800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:95003200-95003800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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