Variant report

Variant	rs9589970
Chromosome Location	chr13:95013129-95013130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1323624	0.83[YRI][hapmap]
rs13378631	1.00[EUR][1000 genomes]
rs1407993	1.00[EUR][1000 genomes]
rs16949768	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17196161	1.00[GIH][hapmap]
rs1853482	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1853483	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1886047	1.00[EUR][1000 genomes]
rs2296566	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs28561518	1.00[EUR][1000 genomes]
rs28587431	1.00[ASN][1000 genomes]
rs60277420	0.87[ASN][1000 genomes]
rs60987661	1.00[ASN][1000 genomes]
rs7338097	1.00[EUR][1000 genomes]
rs7986556	1.00[GIH][hapmap]
rs7986931	1.00[GIH][hapmap]
rs7992123	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8001759	1.00[EUR][1000 genomes]
rs9516397	0.86[CHB][hapmap]
rs9516401	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9516403	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9524449	1.00[CHB][hapmap]
rs9524454	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9524467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9524469	0.93[ASN][1000 genomes]
rs9584219	1.00[EUR][1000 genomes]
rs9584223	1.00[EUR][1000 genomes]
rs9584224	1.00[EUR][1000 genomes]
rs9584225	1.00[EUR][1000 genomes]
rs9589962	1.00[EUR][1000 genomes]
rs9589963	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589965	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589966	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589968	1.00[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589971	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589973	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589975	0.84[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589976	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589978	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589985	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589987	0.87[ASW][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589990	1.00[EUR][1000 genomes]
rs9589993	1.00[EUR][1000 genomes]
rs9589995	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9590001	1.00[EUR][1000 genomes]
rs9590006	1.00[EUR][1000 genomes]
rs9590009	1.00[EUR][1000 genomes]
rs9590010	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv456077	chr13:94993032-95051560	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv562755	chr13:94993032-95051560	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94997000-95034400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:95003800-95023400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:95004000-95022000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr13:95004600-95014000	Weak transcription	HSMM	muscle
5	chr13:95005000-95013400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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