Variant report
| Variant | rs9590006 |
|---|---|
| Chromosome Location | chr13:95080224-95080225 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs13378631 | 1.00[EUR][1000 genomes] |
| rs1407993 | 1.00[EUR][1000 genomes] |
| rs16949768 | 1.00[EUR][1000 genomes] |
| rs1853482 | 1.00[EUR][1000 genomes] |
| rs1853483 | 1.00[EUR][1000 genomes] |
| rs1886047 | 1.00[EUR][1000 genomes] |
| rs28561518 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7338097 | 1.00[EUR][1000 genomes] |
| rs7992123 | 1.00[EUR][1000 genomes] |
| rs8001759 | 1.00[EUR][1000 genomes] |
| rs9584219 | 1.00[EUR][1000 genomes] |
| rs9584223 | 1.00[EUR][1000 genomes] |
| rs9584224 | 1.00[EUR][1000 genomes] |
| rs9584225 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9589962 | 1.00[EUR][1000 genomes] |
| rs9589963 | 1.00[EUR][1000 genomes] |
| rs9589965 | 1.00[EUR][1000 genomes] |
| rs9589966 | 1.00[EUR][1000 genomes] |
| rs9589968 | 1.00[EUR][1000 genomes] |
| rs9589970 | 1.00[EUR][1000 genomes] |
| rs9589971 | 1.00[EUR][1000 genomes] |
| rs9589973 | 1.00[EUR][1000 genomes] |
| rs9589975 | 1.00[EUR][1000 genomes] |
| rs9589976 | 1.00[EUR][1000 genomes] |
| rs9589978 | 1.00[EUR][1000 genomes] |
| rs9589985 | 1.00[EUR][1000 genomes] |
| rs9589987 | 1.00[EUR][1000 genomes] |
| rs9589990 | 1.00[EUR][1000 genomes] |
| rs9589993 | 1.00[EUR][1000 genomes] |
| rs9589995 | 1.00[EUR][1000 genomes] |
| rs9590001 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9590009 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9590010 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916640 | chr13:94521959-95101443 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv533063 | chr13:94560362-95101443 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv34004 | chr13:94906537-95392644 | Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:95074000-95090600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr13:95078200-95089000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
