Variant report

Variant	rs9589987
Chromosome Location	chr13:95036691-95036692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1323624	0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13378631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1407993	1.00[EUR][1000 genomes]
rs16949768	1.00[EUR][1000 genomes]
rs1853482	1.00[EUR][1000 genomes]
rs1853483	1.00[EUR][1000 genomes]
rs1886047	1.00[EUR][1000 genomes]
rs28561518	1.00[EUR][1000 genomes]
rs7338097	1.00[EUR][1000 genomes]
rs7992123	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8001759	1.00[EUR][1000 genomes]
rs9516403	0.82[MKK][hapmap]
rs9584219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584224	1.00[EUR][1000 genomes]
rs9584225	1.00[EUR][1000 genomes]
rs9589962	1.00[EUR][1000 genomes]
rs9589963	1.00[EUR][1000 genomes]
rs9589965	1.00[EUR][1000 genomes]
rs9589966	1.00[EUR][1000 genomes]
rs9589968	0.87[ASW][hapmap];0.86[LWK][hapmap];0.93[MKK][hapmap];1.00[EUR][1000 genomes]
rs9589970	0.87[ASW][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589971	1.00[EUR][1000 genomes]
rs9589973	1.00[EUR][1000 genomes]
rs9589975	1.00[EUR][1000 genomes]
rs9589976	1.00[EUR][1000 genomes]
rs9589978	0.87[ASW][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap];1.00[EUR][1000 genomes]
rs9589985	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589988	1.00[AMR][1000 genomes]
rs9589990	1.00[EUR][1000 genomes]
rs9589993	1.00[EUR][1000 genomes]
rs9589995	1.00[EUR][1000 genomes]
rs9590001	1.00[EUR][1000 genomes]
rs9590006	1.00[EUR][1000 genomes]
rs9590009	1.00[EUR][1000 genomes]
rs9590010	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv456077	chr13:94993032-95051560	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv562755	chr13:94993032-95051560	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95030000-95050000	Weak transcription	Ovary	ovary
2	chr13:95033800-95055400	Weak transcription	HSMMtube	muscle
3	chr13:95034800-95037400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:95034800-95037800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:95034800-95050000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:95034800-95052800	Weak transcription	Fetal Stomach	stomach
7	chr13:95035600-95054800	Weak transcription	Fetal Intestine Small	intestine
8	chr13:95036000-95037200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:95036200-95037000	Enhancers	Brain Substantia Nigra	brain
10	chr13:95036200-95037200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:95036200-95037200	Enhancers	Brain Hippocampus Middle	brain
12	chr13:95036400-95037000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr13:95036600-95037000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr13:95036600-95037000	Enhancers	Fetal Brain Female	brain
15	chr13:95036600-95042000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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