Variant report

Variant	rs1886047
Chromosome Location	chr13:94995212-94995213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13378631	1.00[EUR][1000 genomes]
rs1407993	1.00[EUR][1000 genomes]
rs16949768	1.00[EUR][1000 genomes]
rs1853482	1.00[EUR][1000 genomes]
rs1853483	1.00[EUR][1000 genomes]
rs28561518	1.00[EUR][1000 genomes]
rs7338097	1.00[EUR][1000 genomes]
rs7992123	1.00[EUR][1000 genomes]
rs8001759	1.00[EUR][1000 genomes]
rs9584219	1.00[EUR][1000 genomes]
rs9584223	1.00[EUR][1000 genomes]
rs9584224	1.00[EUR][1000 genomes]
rs9584225	1.00[EUR][1000 genomes]
rs9589962	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9589963	1.00[EUR][1000 genomes]
rs9589965	1.00[EUR][1000 genomes]
rs9589966	1.00[EUR][1000 genomes]
rs9589968	1.00[EUR][1000 genomes]
rs9589970	1.00[EUR][1000 genomes]
rs9589971	1.00[EUR][1000 genomes]
rs9589973	1.00[EUR][1000 genomes]
rs9589975	1.00[EUR][1000 genomes]
rs9589976	1.00[EUR][1000 genomes]
rs9589978	1.00[EUR][1000 genomes]
rs9589985	1.00[EUR][1000 genomes]
rs9589987	1.00[EUR][1000 genomes]
rs9589990	1.00[EUR][1000 genomes]
rs9589993	1.00[EUR][1000 genomes]
rs9589995	1.00[EUR][1000 genomes]
rs9590001	1.00[EUR][1000 genomes]
rs9590006	1.00[EUR][1000 genomes]
rs9590009	1.00[EUR][1000 genomes]
rs9590010	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv456077	chr13:94993032-95051560	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv562755	chr13:94993032-95051560	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94979800-94996800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:94980400-95000600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:94981800-94996600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:94983000-94996200	Weak transcription	HepG2	liver
5	chr13:94988200-94998000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:94990000-95003600	Weak transcription	Fetal Intestine Small	intestine
7	chr13:94990400-94996800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:94991400-94996200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:94994200-94998400	Enhancers	Fetal Stomach	stomach
10	chr13:94994600-94995400	Enhancers	Fetal Muscle Trunk	muscle
11	chr13:94994600-94995400	Enhancers	Stomach Smooth Muscle	stomach
12	chr13:94994600-94997200	Enhancers	Fetal Muscle Leg	muscle
13	chr13:94994600-94997200	Enhancers	Ovary	ovary
14	chr13:94994600-94998200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr13:94994800-94995600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr13:94994800-94995600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:94994800-94997800	Enhancers	Liver	Liver
18	chr13:94994800-94998200	Enhancers	HSMM	muscle
19	chr13:94994800-94998200	Enhancers	HSMMtube	muscle
20	chr13:94995000-94995400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:94995000-94995400	Enhancers	Aorta	Aorta
22	chr13:94995000-94995600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr13:94995000-94996000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr13:94995000-94996000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr13:94995000-94996000	Flanking Active TSS	NH-A	brain
26	chr13:94995000-94996600	Enhancers	Colon Smooth Muscle	Colon
27	chr13:94995000-94996600	Enhancers	Fetal Heart	heart
28	chr13:94995000-94997000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:94995000-94998400	Enhancers	NHDF-Ad	bronchial
30	chr13:94995200-94995400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr13:94995200-94995400	Enhancers	Brain Hippocampus Middle	brain
32	chr13:94995200-94995600	Enhancers	Brain Germinal Matrix	brain
33	chr13:94995200-94995600	Weak transcription	Placenta	Placenta
34	chr13:94995200-94995800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr13:94995200-94996000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr13:94995200-94996800	Weak transcription	Fetal Thymus	thymus
37	chr13:94995200-94997000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr13:94995200-94997000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr13:94995200-94997200	Enhancers	Placenta Amnion	Placenta Amnion
40	chr13:94995200-95004400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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