Variant report

Variant	rs9589993
Chromosome Location	chr13:95049228-95049229
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13378631	1.00[EUR][1000 genomes]
rs1407993	1.00[EUR][1000 genomes]
rs16949768	1.00[EUR][1000 genomes]
rs1853482	1.00[EUR][1000 genomes]
rs1853483	1.00[EUR][1000 genomes]
rs1886047	1.00[EUR][1000 genomes]
rs28561518	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7338097	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7992123	1.00[EUR][1000 genomes]
rs8001759	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584219	1.00[EUR][1000 genomes]
rs9584223	1.00[EUR][1000 genomes]
rs9584224	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9584225	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589962	1.00[EUR][1000 genomes]
rs9589963	1.00[EUR][1000 genomes]
rs9589965	1.00[EUR][1000 genomes]
rs9589966	1.00[EUR][1000 genomes]
rs9589968	1.00[EUR][1000 genomes]
rs9589970	1.00[EUR][1000 genomes]
rs9589971	1.00[EUR][1000 genomes]
rs9589973	1.00[EUR][1000 genomes]
rs9589975	1.00[EUR][1000 genomes]
rs9589976	1.00[EUR][1000 genomes]
rs9589978	1.00[EUR][1000 genomes]
rs9589985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9589987	1.00[EUR][1000 genomes]
rs9589990	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9589995	1.00[EUR][1000 genomes]
rs9590001	1.00[EUR][1000 genomes]
rs9590006	1.00[EUR][1000 genomes]
rs9590009	1.00[EUR][1000 genomes]
rs9590010	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv456077	chr13:94993032-95051560	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv562755	chr13:94993032-95051560	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95030000-95050000	Weak transcription	Ovary	ovary
2	chr13:95033800-95055400	Weak transcription	HSMMtube	muscle
3	chr13:95034800-95050000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr13:95034800-95052800	Weak transcription	Fetal Stomach	stomach
5	chr13:95035600-95054800	Weak transcription	Fetal Intestine Small	intestine
6	chr13:95038600-95051000	Weak transcription	Liver	Liver
7	chr13:95040200-95059200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:95041200-95049800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:95042400-95059000	Weak transcription	Aorta	Aorta
10	chr13:95043200-95051600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:95043200-95057200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:95043600-95057400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr13:95046000-95053000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr13:95046800-95065000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:95047400-95050600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:95047800-95053200	Weak transcription	HepG2	liver
17	chr13:95048200-95049800	Enhancers	Fetal Heart	heart
18	chr13:95048400-95050000	Weak transcription	Left Ventricle	heart
19	chr13:95049000-95050800	Weak transcription	Fetal Intestine Large	intestine
20	chr13:95049200-95059200	Weak transcription	Colon Smooth Muscle	Colon
21	chr13:95049200-95066800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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