Variant report

Variant	rs9589995
Chromosome Location	chr13:95051711-95051712
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13378631	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1407993	1.00[EUR][1000 genomes]
rs16949768	1.00[EUR][1000 genomes]
rs1853482	1.00[EUR][1000 genomes]
rs1853483	1.00[EUR][1000 genomes]
rs1886047	1.00[EUR][1000 genomes]
rs28561518	1.00[EUR][1000 genomes]
rs41275872	0.96[ASN][1000 genomes]
rs7338097	1.00[EUR][1000 genomes]
rs7992123	1.00[EUR][1000 genomes]
rs8001759	1.00[EUR][1000 genomes]
rs9516383	1.00[JPT][hapmap]
rs9516401	1.00[JPT][hapmap]
rs9516403	1.00[JPT][hapmap]
rs9524413	1.00[JPT][hapmap]
rs9524420	1.00[JPT][hapmap]
rs9584219	1.00[EUR][1000 genomes]
rs9584223	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9584224	1.00[EUR][1000 genomes]
rs9584225	1.00[EUR][1000 genomes]
rs9589962	1.00[EUR][1000 genomes]
rs9589963	1.00[EUR][1000 genomes]
rs9589965	1.00[EUR][1000 genomes]
rs9589966	1.00[EUR][1000 genomes]
rs9589968	1.00[EUR][1000 genomes]
rs9589970	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9589971	1.00[EUR][1000 genomes]
rs9589973	1.00[EUR][1000 genomes]
rs9589975	1.00[EUR][1000 genomes]
rs9589976	1.00[EUR][1000 genomes]
rs9589978	1.00[EUR][1000 genomes]
rs9589985	1.00[EUR][1000 genomes]
rs9589987	1.00[EUR][1000 genomes]
rs9589990	1.00[EUR][1000 genomes]
rs9589993	1.00[EUR][1000 genomes]
rs9590001	1.00[EUR][1000 genomes]
rs9590006	1.00[EUR][1000 genomes]
rs9590009	1.00[EUR][1000 genomes]
rs9590010	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95033800-95055400	Weak transcription	HSMMtube	muscle
2	chr13:95034800-95052800	Weak transcription	Fetal Stomach	stomach
3	chr13:95035600-95054800	Weak transcription	Fetal Intestine Small	intestine
4	chr13:95040200-95059200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:95042400-95059000	Weak transcription	Aorta	Aorta
6	chr13:95043200-95057200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:95043600-95057400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:95046000-95053000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:95046800-95065000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:95047800-95053200	Weak transcription	HepG2	liver
11	chr13:95049200-95059200	Weak transcription	Colon Smooth Muscle	Colon
12	chr13:95049200-95066800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:95049800-95052200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr13:95050800-95062800	Weak transcription	HSMM	muscle
15	chr13:95051000-95054200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:95051400-95066800	Weak transcription	Fetal Intestine Large	intestine
17	chr13:95051600-95052400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:95051600-95052800	Weak transcription	Liver	Liver
19	chr13:95051600-95055200	Weak transcription	Ovary	ovary

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