Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95065120..95066896-chr13:95067255..95069081,2	K562	blood:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13378631	1.00[EUR][1000 genomes]
rs1407993	1.00[EUR][1000 genomes]
rs16949768	1.00[EUR][1000 genomes]
rs1853482	1.00[EUR][1000 genomes]
rs1853483	1.00[EUR][1000 genomes]
rs1886047	1.00[EUR][1000 genomes]
rs28561518	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7338097	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7992123	1.00[EUR][1000 genomes]
rs8001759	1.00[EUR][1000 genomes]
rs9584219	1.00[EUR][1000 genomes]
rs9584223	1.00[EUR][1000 genomes]
rs9584224	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589962	1.00[EUR][1000 genomes]
rs9589963	1.00[EUR][1000 genomes]
rs9589965	1.00[EUR][1000 genomes]
rs9589966	1.00[EUR][1000 genomes]
rs9589968	1.00[EUR][1000 genomes]
rs9589970	1.00[EUR][1000 genomes]
rs9589971	1.00[EUR][1000 genomes]
rs9589973	1.00[EUR][1000 genomes]
rs9589975	1.00[EUR][1000 genomes]
rs9589976	1.00[EUR][1000 genomes]
rs9589978	1.00[EUR][1000 genomes]
rs9589985	1.00[EUR][1000 genomes]
rs9589987	1.00[EUR][1000 genomes]
rs9589990	1.00[EUR][1000 genomes]
rs9589993	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9589995	1.00[EUR][1000 genomes]
rs9590001	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9590006	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9590009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9590010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95056600-95072000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:95066600-95069600	Enhancers	Fetal Intestine Small	intestine
3	chr13:95067000-95068800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:95067800-95069200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr13:95067800-95070800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:95068000-95069400	Enhancers	Fetal Intestine Large	intestine
7	chr13:95068200-95069000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:95068200-95069000	Enhancers	Fetal Stomach	stomach
9	chr13:95068400-95068800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:95068400-95068800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:95068400-95069000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:95068400-95069200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:95068400-95069200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:95068400-95069600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: