Variant report

Variant	rs9516397
Chromosome Location	chr13:94992507-94992508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12584548	0.81[EUR][1000 genomes]
rs17175259	0.92[ASN][1000 genomes]
rs17196161	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17253836	0.98[ASN][1000 genomes]
rs17253857	0.83[EUR][1000 genomes]
rs28378852	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58627646	0.81[AFR][1000 genomes]
rs60277420	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74103904	0.88[ASN][1000 genomes]
rs7981682	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982883	0.81[AFR][1000 genomes]
rs7986556	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986931	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516394	0.96[ASN][1000 genomes]
rs9516395	0.96[ASN][1000 genomes]
rs9516396	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516398	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516401	0.86[CHB][hapmap]
rs9516402	0.81[EUR][1000 genomes]
rs9516403	0.86[CHB][hapmap]
rs9516404	0.83[EUR][1000 genomes]
rs9524440	0.92[ASN][1000 genomes]
rs9524442	0.96[ASN][1000 genomes]
rs9524444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9524447	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9524448	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524463	0.83[EUR][1000 genomes]
rs9524467	0.86[CHB][hapmap]
rs9589970	0.86[CHB][hapmap]
rs9589972	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94979800-94996800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:94980400-95000600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:94981800-94996600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:94983000-94996200	Weak transcription	HepG2	liver
5	chr13:94983200-94994800	Weak transcription	HSMMtube	muscle
6	chr13:94983200-94995200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr13:94984200-94995200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:94988200-94998000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr13:94988400-94994800	Weak transcription	Liver	Liver
10	chr13:94988600-94994200	Weak transcription	Fetal Stomach	stomach
11	chr13:94988600-94994800	Weak transcription	HSMM	muscle
12	chr13:94989600-94994600	Weak transcription	Fetal Muscle Leg	muscle
13	chr13:94990000-95003600	Weak transcription	Fetal Intestine Small	intestine
14	chr13:94990400-94996800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:94991400-94994600	Weak transcription	NH-A	brain
16	chr13:94991400-94996200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:94991600-94995000	Weak transcription	Placenta	Placenta
18	chr13:94991800-94994600	Weak transcription	Ovary	ovary

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